Map** epigenetic modifications by sequencing technologies

X Chen, H Xu, X Shu, CX Song - Cell Death & Differentiation, 2025 - nature.com
The “epigenetics” concept was first described in 1942. Thus far, chemical modifications on
histones, DNA, and RNA have emerged as three important building blocks of epigenetic …

Map** the epigenetic modifications of DNA and RNA

LY Zhao, J Song, Y Liu, CX Song, C Yi - Protein & cell, 2020 - academic.oup.com
Over 17 and 160 types of chemical modifications have been identified in DNA and RNA,
respectively. The interest in understanding the various biological functions of DNA and RNA …

Restoration of TET2 function blocks aberrant self-renewal and leukemia progression

L Cimmino, I Dolgalev, Y Wang, A Yoshimi, GH Martin… - Cell, 2017 - cell.com
Loss-of-function mutations in TET2 occur frequently in patients with clonal hematopoiesis,
myelodysplastic syndrome (MDS), and acute myeloid leukemia (AML) and are associated …

TET enzymes in the immune system: from DNA demethylation to immunotherapy, inflammation, and cancer

IF López-Moyado, M Ko, PG Hogan… - Annual review of …, 2024 - annualreviews.org
Ten-eleven translocation (TET) proteins are iron-dependent and α-ketoglutarate-dependent
dioxygenases that sequentially oxidize the methyl group of 5-methylcytosine (5mC) to 5 …

Modern epigenetics methods in biological research

Y Li - Methods, 2021 - Elsevier
The definition of epigenetics refers that molecular modifications on DNA that can regulate
gene activity are independent of DNA sequence and mitotically stable. Notably, epigenetics …

Map** DNA methylation with high-throughput nanopore sequencing

AC Rand, M Jain, JM Eizenga, A Musselman-Brown… - Nature …, 2017 - nature.com
DNA chemical modifications regulate genomic function. We present a framework for
map** cytosine and adenosine methylation with the Oxford Nanopore Technologies …

A comparison of methods for detecting DNA methylation from long-read sequencing of human genomes

BD Sigurpalsdottir, OA Stefansson, G Holley, D Beyter… - Genome Biology, 2024 - Springer
Background Long-read sequencing can enable the detection of base modifications, such as
CpG methylation, in single molecules of DNA. The most commonly used methods for long …

Simultaneous sequencing of genetic and epigenetic bases in DNA

J Füllgrabe, WS Gosal, P Creed, S Liu, CK Lumby… - Nature …, 2023 - nature.com
DNA comprises molecular information stored in genetic and epigenetic bases, both of which
are vital to our understanding of biology. Most DNA sequencing approaches address either …

Profiling genome-wide DNA methylation

WS Yong, FM Hsu, PY Chen - Epigenetics & chromatin, 2016 - Springer
DNA methylation is an epigenetic modification that plays an important role in regulating
gene expression and therefore a broad range of biological processes and diseases. DNA …

Epigenetic modifications in cardiovascular aging and diseases

W Zhang, M Song, J Qu, GH Liu - Circulation research, 2018 - ahajournals.org
Aging is associated with a progressive decline in cardiovascular structure and function.
Accumulating evidence links cardiovascular aging to epigenetic alterations encompassing a …