Top 10 plant‐parasitic nematodes in molecular plant pathology

JT Jones, A Haegeman, EGJ Danchin… - Molecular plant …, 2013 - Wiley Online Library
The aim of this review was to undertake a survey of researchers working with plant‐parasitic
nematodes in order to determine a 'top 10'list of these pathogens based on scientific and …

Twenty years of plant genome sequencing: achievements and challenges

Y Sun, L Shang, QH Zhu, L Fan, L Guo - Trends in Plant Science, 2022 - cell.com
Publication of the complete genome sequence of Arabidopsis thaliana, the first plant
reference genome, in December 2000 heralded the beginning of the plant genome era …

One thousand plant transcriptomes and the phylogenomics of green plants

Nature, 2019 - nature.com
Green plants (Viridiplantae) include around 450,000–500,000 species, of great diversity and
have important roles in terrestrial and aquatic ecosystems. Here, as part of the One …

XSEDE: accelerating scientific discovery

J Towns, T Cockerill, M Dahan, I Foster… - … in science & …, 2014 - ieeexplore.ieee.org
Computing in science and engineering is now ubiquitous: digital technologies underpin,
accelerate, and enable new, even transformational, research in all domains. Access to an …

Dual domestications and origin of traits in grapevine evolution

Y Dong, S Duan, Q **a, Z Liang, X Dong, K Margaryan… - Science, 2023 - science.org
We elucidate grapevine evolution and domestication histories with 3525 cultivated and wild
accessions worldwide. In the Pleistocene, harsh climate drove the separation of wild grape …

Phased diploid genome assembly with single-molecule real-time sequencing

CS Chin, P Peluso, FJ Sedlazeck, M Nattestad… - Nature …, 2016 - nature.com
While genome assembly projects have been successful in many haploid and inbred
species, the assembly of noninbred or rearranged heterozygous genomes remains a major …

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

Y Wang, H Tang, JD DeBarry, X Tan, J Li… - Nucleic acids …, 2012 - academic.oup.com
MCScan is an algorithm able to scan multiple genomes or subgenomes in order to identify
putative homologous chromosomal regions, and align these regions using genes as …

[HTML][HTML] The tomato genome sequence provides insights into fleshy fruit evolution

xx Tomato Genome Consortium - Nature, 2012 - ncbi.nlm.nih.gov
AUTHOR CONTRIBUTIONS AAL, ABA, ABE, ABG, ABO, AFI, AGR, AHA, AHU, AJA, AJM,
AJO, AKM, AKS, AKT, AMO, APA, ARI, ASI, ATR, AUS, AVE, BAR, BAW, BCK, BCM, BDK …

Circos: an information aesthetic for comparative genomics

M Krzywinski, J Schein, I Birol, J Connors… - Genome …, 2009 - genome.cshlp.org
We created a visualization tool called Circos to facilitate the identification and analysis of
similarities and differences arising from comparisons of genomes. Our tool is effective in …

Phytozome: a comparative platform for green plant genomics

DM Goodstein, S Shu, R Howson… - Nucleic acids …, 2012 - academic.oup.com
The number of sequenced plant genomes and associated genomic resources is growing
rapidly with the advent of both an increased focus on plant genomics from funding agencies …