Mass spectrometry‐based high‐throughput proteomics and its role in biomedical studies and systems biology
There are multiple reasons why the next generation of biological and medical studies
require increasing numbers of samples. Biological systems are dynamic, and the effect of a …
require increasing numbers of samples. Biological systems are dynamic, and the effect of a …
Instrumentation at the leading edge of proteomics
The proteome, or collection of proteoforms expressed in a biological system, is dynamic and
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …
Evaluating the performance of the astral mass analyzer for quantitative proteomics using data-independent acquisition
LR Heil, E Damoc, TN Arrey, A Pashkova… - Journal of proteome …, 2023 - ACS Publications
We evaluate the quantitative performance of the newly released Asymmetric Track Lossless
(Astral) analyzer. Using data-independent acquisition, the Thermo Scientific Orbitrap Astral …
(Astral) analyzer. Using data-independent acquisition, the Thermo Scientific Orbitrap Astral …
Spatial single-cell mass spectrometry defines zonation of the hepatocyte proteome
Single-cell proteomics by mass spectrometry is emerging as a powerful and unbiased
method for the characterization of biological heterogeneity. So far, it has been limited to …
method for the characterization of biological heterogeneity. So far, it has been limited to …
Benchmarking commonly used software suites and analysis workflows for DIA proteomics and phosphoproteomics
R Lou, Y Cao, S Li, X Lang, Y Li, Y Zhang… - Nature …, 2023 - nature.com
A plethora of software suites and multiple classes of spectral libraries have been developed
to enhance the depth and robustness of data-independent acquisition (DIA) data …
to enhance the depth and robustness of data-independent acquisition (DIA) data …
Robust dimethyl‐based multiplex‐DIA doubles single‐cell proteome depth via a reference channel
Single‐cell proteomics aims to characterize biological function and heterogeneity at the
level of proteins in an unbiased manner. It is currently limited in proteomic depth, throughput …
level of proteins in an unbiased manner. It is currently limited in proteomic depth, throughput …
Immobility-associated thromboprotection is conserved across mammalian species from bear to human
Venous thromboembolism (VTE) comprising deep venous thrombosis and pulmonary
embolism is a major cause of morbidity and mortality. Short-term immobility-related …
embolism is a major cause of morbidity and mortality. Short-term immobility-related …
Prediction of brain metastasis development with DNA methylation signatures
Brain metastases (BMs) are the most common and among the deadliest brain tumors.
Currently, there are no reliable predictors of BM development from primary cancer, which …
Currently, there are no reliable predictors of BM development from primary cancer, which …
Robust proteome profiling of cysteine-reactive fragments using label-free chemoproteomics
GS Biggs, EE Cawood, A Vuorinen… - Nature …, 2025 - nature.com
Identifying pharmacological probes for human proteins represents a key opportunity to
accelerate the discovery of new therapeutics. High-content screening approaches to expand …
accelerate the discovery of new therapeutics. High-content screening approaches to expand …
Fast and deep phosphoproteome analysis with the Orbitrap Astral mass spectrometer
Owing to its roles in cellular signal transduction, protein phosphorylation plays critical roles
in myriad cell processes. That said, detecting and quantifying protein phosphorylation has …
in myriad cell processes. That said, detecting and quantifying protein phosphorylation has …