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Sequence composition changes in short tandem repeats: heterogeneity, detection, mechanisms and clinical implications
Short tandem repeats (STRs) are a class of repetitive elements, composed of tandem arrays
of 1–6 base pair sequence motifs, that comprise a substantial fraction of the human genome …
of 1–6 base pair sequence motifs, that comprise a substantial fraction of the human genome …
Insertions and deletions: Computational methods, evolutionary dynamics, and biological applications
Insertions and deletions constitute the second most important source of natural genomic
variation. Insertions and deletions make up to 25% of genomic variants in humans and are …
variation. Insertions and deletions make up to 25% of genomic variants in humans and are …
Reconstruction of the human amylase locus reveals ancient duplications seeding modern-day variation
Previous studies suggested that the copy number of the human salivary amylase gene,
AMY1, correlates with starch-rich diets. However, evolutionary analyses are hampered by …
AMY1, correlates with starch-rich diets. However, evolutionary analyses are hampered by …
Neurological disorders caused by novel non-coding repeat expansions: clinical features and differential diagnosis
Nucleotide repeat expansions in the human genome are a well-known cause of
neurological disease. In the past decade, advances in DNA sequencing technologies have …
neurological disease. In the past decade, advances in DNA sequencing technologies have …
A familial, telomere-to-telomere reference for human de novo mutation and recombination from a four-generation pedigree
Using five complementary short-and long-read sequencing technologies, we phased and
assembled> 95% of each diploid human genome in a four-generation, 28-member family …
assembled> 95% of each diploid human genome in a four-generation, 28-member family …
WebSTR: a population-wide database of short tandem repeat variation in humans
Short tandem repeats (STRs) are consecutive repetitions of one to six nucleotide motifs.
They are hypervariable due to the high prevalence of repeat unit insertions or deletions …
They are hypervariable due to the high prevalence of repeat unit insertions or deletions …
Short Tandem Repeats in the era of next-generation sequencing: from historical loci to population databases
K Uguen, JL Michaud, E Génin - European Journal of Human Genetics, 2024 - nature.com
In this study, we explore the landscape of short tandem repeats (STRs) within the human
genome through the lens of evolving technologies to detect genomic variations. STRs, which …
genome through the lens of evolving technologies to detect genomic variations. STRs, which …
Advancements in copy number variation screening in herbivorous livestock genomes and their association with phenotypic traits
X Liu, W Chen, B Huang, X Wang, Y Peng… - Frontiers in veterinary …, 2024 - frontiersin.org
Copy number variations (CNVs) have garnered increasing attention within the realm of
genetics due to their prevalence in human, animal, and plant genomes. These structural …
genetics due to their prevalence in human, animal, and plant genomes. These structural …
Short tandem repeat mutations regulate gene expression in colorectal cancer
Short tandem repeat (STR) mutations are prevalent in colorectal cancer (CRC), especially in
tumours with the microsatellite instability (MSI) phenotype. While STR length variations are …
tumours with the microsatellite instability (MSI) phenotype. While STR length variations are …
Statistical Genomics Analysis of Simple Sequence Repeats from the Paphiopedilum Malipoense Transcriptome Reveals Control Knob Motifs Modulating Gene …
Y Liang, J Hao, J Wang, G Zhang, Y Su… - Advanced …, 2024 - Wiley Online Library
Simple sequence repeats (SSRs) are found in nonrandom distributions in genomes and are
thought to impact gene expression. The distribution patterns of 48 295 SSRs of …
thought to impact gene expression. The distribution patterns of 48 295 SSRs of …