Illuminating the dark phosphoproteome

EJ Needham, BL Parker, T Burykin, DE James… - Science …, 2019 - science.org
Protein phosphorylation is a major regulator of protein function and biological outcomes.
This was first recognized through functional biochemical experiments, and in the past …

Signaling pathways involved in the regulation of mRNA translation

PP Roux, I Topisirovic - Molecular and cellular biology, 2018 - Taylor & Francis
Translation is a key step in the regulation of gene expression and one of the most energy-
consuming processes in the cell. In response to various stimuli, multiple signaling pathways …

Extensive protein pyrophosphorylation revealed in human cell lines

JAM Morgan, A Singh, L Kurz, M Nadler-Holly… - Nature Chemical …, 2024 - nature.com
Reversible protein phosphorylation is a central signaling mechanism in eukaryotes.
Although mass-spectrometry-based phosphoproteomics has become routine, identification …

Streamlined tandem mass tag (SL-TMT) protocol: an efficient strategy for quantitative (phospho) proteome profiling using tandem mass tag-synchronous precursor …

J Navarrete-Perea, Q Yu, SP Gygi… - Journal of proteome …, 2018 - ACS Publications
Mass spectrometry (MS) coupled toisobaric labeling has developed rapidly into a powerful
strategy for high-throughput protein quantification. Sample multiplexing and exceptional …

Protein analysis by shotgun/bottom-up proteomics

Y Zhang, BR Fonslow, B Shan, MC Baek… - Chemical …, 2013 - ACS Publications
According to Genome Sequencing Project statistics (http://www. ncbi. nlm. nih.
gov/genomes/static/gpstat. html), as of February 16, 2012, complete gene sequences have …

PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and …

PV Hornbeck, JM Kornhauser, S Tkachev… - Nucleic acids …, 2012 - academic.oup.com
Abstract PhosphoSitePlus (http://www. phosphosite. org) is an open, comprehensive,
manually curated and interactive resource for studying experimentally observed post …

Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation

DL Swaney, P Beltrao, L Starita, A Guo, J Rush… - Nature …, 2013 - nature.com
Cross-talk between different types of post-translational modifications on the same protein
molecule adds specificity and combinatorial logic to signal processing, but it has not been …

[HTML][HTML] Neurofibromin structure, functions and regulation

M Bergoug, M Doudeau, F Godin, C Mosrin, B Vallée… - Cells, 2020 - mdpi.com
Neurofibromin is a large and multifunctional protein encoded by the tumor suppressor gene
NF1, mutations of which cause the tumor predisposition syndrome neurofibromatosis type 1 …

MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics

L Ting, R Rad, SP Gygi, W Haas - Nature methods, 2011 - nature.com
Quantitative mass spectrometry–based proteomics is highly versatile but not easily
multiplexed. Isobaric labeling strategies allow mass spectrometry–based multiplexed …

Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present

M Bantscheff, S Lemeer, MM Savitski… - Analytical and bioanalytical …, 2012 - Springer
Mass-spectrometry-based proteomics is continuing to make major contributions to the
discovery of fundamental biological processes and, more recently, has also developed into …