Integrative omics for health and disease

KJ Karczewski, MP Snyder - Nature Reviews Genetics, 2018 - nature.com
Advances in omics technologies—such as genomics, transcriptomics, proteomics and
metabolomics—have begun to enable personalized medicine at an extraordinarily detailed …

Genetic studies in intellectual disability and related disorders

LELM Vissers, C Gilissen, JA Veltman - Nature Reviews Genetics, 2016 - nature.com
Genetic factors play a major part in intellectual disability (ID), but genetic studies have been
complicated for a long time by the extreme clinical and genetic heterogeneity. Recently …

Nosology and classification of genetic skeletal disorders: 2019 revision

GR Mortier, DH Cohn, V Cormier‐Daire… - American journal of …, 2019 - Wiley Online Library
The application of massively parallel sequencing technology to the field of skeletal disorders
has boosted the discovery of the underlying genetic defect for many of these diseases. It has …

AI-MARRVEL—a knowledge-driven AI system for diagnosing Mendelian disorders

D Mao, C Liu, L Wang, R Ai-Ouran, C Deisseroth… - Nejm Ai, 2024 - ai.nejm.org
Background Diagnosing genetic disorders requires extensive manual curation and
interpretation of candidate variants, a labor-intensive task even for trained geneticists …

M-CAP eliminates a majority of variants of uncertain significance in clinical exomes at high sensitivity

KA Jagadeesh, AM Wenger, MJ Berger, H Guturu… - Nature …, 2016 - nature.com
Variant pathogenicity classifiers such as SIFT, PolyPhen-2, CADD, and MetaLR assist in
interpretation of the hundreds of rare, missense variants in the typical patient genome by …

BEDTools: the Swiss‐army tool for genome feature analysis

AR Quinlan - Current protocols in bioinformatics, 2014 - Wiley Online Library
Technological advances have enabled the use of DNA sequencing as a flexible tool to
characterize genetic variation and to measure the activity of diverse cellular phenomena …

Genomic variant annotation and prioritization with ANNOVAR and wANNOVAR

H Yang, K Wang - Nature protocols, 2015 - nature.com
Recent developments in sequencing techniques have enabled rapid and high-throughput
generation of sequence data, democratizing the ability to compile information on large …

SLC transporters as therapeutic targets: emerging opportunities

L Lin, SW Yee, RB Kim, KM Giacomini - Nature reviews Drug discovery, 2015 - nature.com
Solute carrier (SLC) transporters—a family of more than 300 membrane-bound proteins that
facilitate the transport of a wide array of substrates across biological membranes—have …

Mendelian gene discovery: fast and furious with no end in sight

MJ Bamshad, DA Nickerson, JX Chong - The American Journal of Human …, 2019 - cell.com
Gene discovery for Mendelian conditions (MCs) offers a direct path to understanding
genome function. Approaches based on next-generation sequencing applied at scale have …

Advancements in next-generation sequencing

SE Levy, RM Myers - Annual review of genomics and human …, 2016 - annualreviews.org
The term next-generation sequencing is almost a decade old, but it remains the colloquial
way to describe highly parallel or high-output sequencing methods that produce data at or …