Electron microscopy studies of soft nanomaterials

Z Lyu, L Yao, W Chen, FC Kalutantirige… - Chemical …, 2023 - ACS Publications
This review highlights recent efforts on applying electron microscopy (EM) to soft (including
biological) nanomaterials. We will show how developments of both the hardware and …

Machine learning for active matter

F Cichos, K Gustavsson, B Mehlig… - Nature Machine …, 2020 - nature.com
The availability of large datasets has boosted the application of machine learning in many
fields and is now starting to shape active-matter research as well. Machine learning …

Objective comparison of methods to decode anomalous diffusion

G Muñoz-Gil, G Volpe, MA Garcia-March… - Nature …, 2021 - nature.com
Deviations from Brownian motion leading to anomalous diffusion are found in transport
dynamics from quantum physics to life sciences. The characterization of anomalous diffusion …

A guide to single-particle tracking

F Simon, LE Weiss, S van Teeffelen - Nature Reviews Methods Primers, 2024 - nature.com
Individual proteins and protein complexes undergo various motion types, including free
diffusion, confinement, subdiffusion and directed motion. Different motion behaviours reflect …

Bayesian deep learning for error estimation in the analysis of anomalous diffusion

H Seckler, R Metzler - Nature Communications, 2022 - nature.com
Modern single-particle-tracking techniques produce extensive time-series of diffusive motion
in a wide variety of systems, from single-molecule motion in living-cells to movement …

Quantitative digital microscopy with deep learning

B Midtvedt, S Helgadottir, A Argun, J Pineda… - Applied Physics …, 2021 - pubs.aip.org
Video microscopy has a long history of providing insight and breakthroughs for a broad
range of disciplines, from physics to biology. Image analysis to extract quantitative …

Machine-learning solutions for the analysis of single-particle diffusion trajectories

H Seckler, J Szwabinski, R Metzler - The Journal of Physical …, 2023 - ACS Publications
Single-particle traces of the diffusive motion of molecules, cells, or animals are by now
routinely measured, similar to stochastic records of stock prices or weather data …

Heterogeneous anomalous transport in cellular and molecular biology

TA Waigh, N Korabel - Reports on Progress in Physics, 2023 - iopscience.iop.org
It is well established that a wide variety of phenomena in cellular and molecular biology
involve anomalous transport eg the statistics for the motility of cells and molecules are …

Misalignment resilient diffractive optical networks

D Mengu, Y Zhao, NT Yardimci, Y Rivenson… - …, 2020 - degruyter.com
As an optical machine learning framework, Diffractive Deep Neural Networks (D2NN) take
advantage of data-driven training methods used in deep learning to devise light–matter …

Single trajectory characterization via machine learning

G Muñoz-Gil, MA Garcia-March, C Manzo… - New Journal of …, 2020 - iopscience.iop.org
In order to study transport in complex environments, it is extremely important to determine
the physical mechanism underlying diffusion and precisely characterize its nature and …