Adipose tissue at single-cell resolution

B Maniyadath, Q Zhang, RK Gupta, S Mandrup - Cell metabolism, 2023 - cell.com
Adipose tissue exhibits remarkable plasticity with capacity to change in size and cellular
composition under physiological and pathophysiological conditions. The emergence of …

Toward a foundation model of causal cell and tissue biology with a Perturbation Cell and Tissue Atlas

JE Rood, A Hupalowska, A Regev - Cell, 2024 - cell.com
Comprehensively charting the biologically causal circuits that govern the phenotypic space
of human cells has often been viewed as an insurmountable challenge. However, in the last …

An immune cell atlas reveals the dynamics of human macrophage specification during prenatal development

Z Wang, Z Wu, H Wang, R Feng, G Wang, M Li… - Cell, 2023 - cell.com
Macrophages are heterogeneous and play critical roles in development and disease, but
their diversity, function, and specification remain inadequately understood during human …

Method of moments framework for differential expression analysis of single-cell RNA sequencing data

MC Kim, R Gate, DS Lee, A Tolopko, A Lu, E Gordon… - Cell, 2024 - cell.com
Differential expression analysis of single-cell RNA sequencing (scRNA-seq) data is central
for characterizing how experimental factors affect the distribution of gene expression …

Th17. 1 lymphocytes: emerging players in the orchestra of immune-mediated inflammatory diseases

DP Misra, V Agarwal - Clinical Rheumatology, 2022 - Springer
It is now well established that Th17 lymphocytes associate with myriad immune-mediated
inflammatory diseases. Over the past one and a half decades, a subset of Th17 lymphocytes …

Gene regulatory network inference from CRISPR perturbations in primary CD4+ T cells elucidates the genomic basis of immune disease

JS Weinstock, MM Arce, JW Freimer, M Ota, A Marson… - Cell Genomics, 2024 - cell.com
The effects of genetic variation on complex traits act mainly through changes in gene
regulation. Although many genetic variants have been linked to target genes in cis, the trans …

Integration of eQTL and GWAS analysis uncovers a genetic regulation of natural ionomic variation in Arabidopsis

C Xu, LY Song, Y Zhou, DN Ma, QS Ding, ZJ Guo, J Li… - Plant Cell Reports, 2023 - Springer
Key message This study provided important insights into the genetic architecture of
variations in A. thaliana leaf ionome in a cell-type-specific manner. Abstract The functional …

[HTML][HTML] Sex-dependent placental methylation quantitative trait loci provide insight into the prenatal origins of childhood onset traits and conditions

W Casazza, AM Inkster, GF Del Gobbo, V Yuan… - Iscience, 2024 - cell.com
Molecular quantitative trait loci (QTLs) allow us to understand the biology captured in
genome-wide association studies (GWASs). The placenta regulates fetal development and …

Functional genomics implicates natural killer cells in the pathogenesis of ankylosing spondylitis

M Chiñas, D Fernandez-Salinas, VRC Aguiar… - Human Genetics and …, 2025 - cell.com
Multiple lines of evidence indicate that ankylosing spondylitis (AS) is a lymphocyte-driven
disease. However, which lymphocyte populations are critical in AS pathogenesis is not …

Private information leakage from single-cell count matrices

CR Walker, X Li, M Chakravarthy, W Lounsbery-Scaife… - Cell, 2024 - cell.com
The increase in publicly available human single-cell datasets, encompassing millions of
cells from many donors, has significantly enhanced our understanding of complex biological …