Adipose tissue at single-cell resolution
Adipose tissue exhibits remarkable plasticity with capacity to change in size and cellular
composition under physiological and pathophysiological conditions. The emergence of …
composition under physiological and pathophysiological conditions. The emergence of …
Toward a foundation model of causal cell and tissue biology with a Perturbation Cell and Tissue Atlas
JE Rood, A Hupalowska, A Regev - Cell, 2024 - cell.com
Comprehensively charting the biologically causal circuits that govern the phenotypic space
of human cells has often been viewed as an insurmountable challenge. However, in the last …
of human cells has often been viewed as an insurmountable challenge. However, in the last …
An immune cell atlas reveals the dynamics of human macrophage specification during prenatal development
Macrophages are heterogeneous and play critical roles in development and disease, but
their diversity, function, and specification remain inadequately understood during human …
their diversity, function, and specification remain inadequately understood during human …
Method of moments framework for differential expression analysis of single-cell RNA sequencing data
Differential expression analysis of single-cell RNA sequencing (scRNA-seq) data is central
for characterizing how experimental factors affect the distribution of gene expression …
for characterizing how experimental factors affect the distribution of gene expression …
Th17. 1 lymphocytes: emerging players in the orchestra of immune-mediated inflammatory diseases
It is now well established that Th17 lymphocytes associate with myriad immune-mediated
inflammatory diseases. Over the past one and a half decades, a subset of Th17 lymphocytes …
inflammatory diseases. Over the past one and a half decades, a subset of Th17 lymphocytes …
Gene regulatory network inference from CRISPR perturbations in primary CD4+ T cells elucidates the genomic basis of immune disease
The effects of genetic variation on complex traits act mainly through changes in gene
regulation. Although many genetic variants have been linked to target genes in cis, the trans …
regulation. Although many genetic variants have been linked to target genes in cis, the trans …
Integration of eQTL and GWAS analysis uncovers a genetic regulation of natural ionomic variation in Arabidopsis
Key message This study provided important insights into the genetic architecture of
variations in A. thaliana leaf ionome in a cell-type-specific manner. Abstract The functional …
variations in A. thaliana leaf ionome in a cell-type-specific manner. Abstract The functional …
[HTML][HTML] Sex-dependent placental methylation quantitative trait loci provide insight into the prenatal origins of childhood onset traits and conditions
Molecular quantitative trait loci (QTLs) allow us to understand the biology captured in
genome-wide association studies (GWASs). The placenta regulates fetal development and …
genome-wide association studies (GWASs). The placenta regulates fetal development and …
Functional genomics implicates natural killer cells in the pathogenesis of ankylosing spondylitis
Multiple lines of evidence indicate that ankylosing spondylitis (AS) is a lymphocyte-driven
disease. However, which lymphocyte populations are critical in AS pathogenesis is not …
disease. However, which lymphocyte populations are critical in AS pathogenesis is not …
Private information leakage from single-cell count matrices
The increase in publicly available human single-cell datasets, encompassing millions of
cells from many donors, has significantly enhanced our understanding of complex biological …
cells from many donors, has significantly enhanced our understanding of complex biological …