Water in nanopores and biological channels: a molecular simulation perspective

CI Lynch, S Rao, MSP Sansom - Chemical reviews, 2020 - ACS Publications
This Review explores the dynamic behavior of water within nanopores and biological
channels in lipid bilayer membranes. We focus on molecular simulation studies, alongside …

Proton transfer 200 years after von Grotthuss: Insights from ab initio simulations

D Marx - ChemPhysChem, 2006 - Wiley Online Library
In the last decade, ab initio simulations and especially Car–Parrinello molecular dynamics
have significantly contributed to the improvement of our understanding of both the physical …

[書籍][B] Ab initio molecular dynamics: basic theory and advanced methods

D Marx, J Hutter - 2009 - books.google.com
Ab initio molecular dynamics revolutionized the field of realistic computer simulation of
complex molecular systems and processes, including chemical reactions, by unifying …

Proton transfer through the water gossamer

A Hassanali, F Giberti, J Cuny, TD Kühne… - Proceedings of the …, 2013 - pnas.org
The diffusion of protons through water is understood within the framework of the Grotthuss
mechanism, which requires that they undergo structural diffusion in a stepwise manner …

Aqueous basic solutions: hydroxide solvation, structural diffusion, and comparison to the hydrated proton

D Marx, A Chandra, ME Tuckerman - Chemical reviews, 2010 - ACS Publications
Many hydrogen-bonded liquids, molecular solids, and lowdimensional systems support
anomalous diffusion mechanisms of topological charge defects created by the addition or …

Computer simulation of proton solvation and transport in aqueous and biomolecular systems

GA Voth - Accounts of Chemical Research, 2006 - ACS Publications
The excess proton in aqueous media is critical to many aspects of chemistry, biology, and
materials science. This species is at the heart of the most elementary of chemical (eg, acid …

Special pair dance and partner selection: Elementary steps in proton transport in liquid water

O Markovitch, H Chen, S Izvekov… - The Journal of …, 2008 - ACS Publications
Conditional and time-dependent radial distribution functions reveal the details of the water
structure surrounding the hydronium during the proton mobility process. Using this …

Proton solvation and transport in aqueous and biomolecular systems: Insights from computer simulations

JMJ Swanson, CM Maupin, H Chen… - The Journal of …, 2007 - ACS Publications
The excess proton in aqueous media plays a pivotal role in many fundamental chemical (eg,
acid− base chemistry) and biological (eg, bioenergetics and enzyme catalysis) processes …

Concerted Hydrogen-Bond Dynamics in the Transport Mechanism of the Hydrated Proton:<? format?> A First-Principles Molecular Dynamics Study

TC Berkelbach, HS Lee, ME Tuckerman - Physical review letters, 2009 - APS
First-principles molecular dynamics calculations performed in a fully converged basis set are
used to reveal new details about the mechanism of the anomalous proton-transport process …

Dynamical properties of liquid water from ab initio molecular dynamics performed in the complete basis set limit

HS Lee, ME Tuckerman - The Journal of chemical physics, 2007 - pubs.aip.org
Dynamical properties of liquid water were studied using Car-Parrinello [Phys. Rev. Lett. 55,
2471 (1985)] ab initio molecular dynamics (AIMD) simulations within the Kohn-Sham (KS) …