Reconsidering plant memory: Intersections between stress recovery, RNA turnover, and epigenetics
Plants grow in dynamic environments where they can be exposed to a multitude of stressful
factors, all of which affect their development, yield, and, ultimately, reproductive success …
factors, all of which affect their development, yield, and, ultimately, reproductive success …
Controlling gene expression in response to stress
Acute stress puts cells at risk, and rapid adaptation is crucial for maximizing cell survival.
Cellular adaptation mechanisms include modification of certain aspects of cell physiology …
Cellular adaptation mechanisms include modification of certain aspects of cell physiology …
Poly (A)-tail profiling reveals an embryonic switch in translational control
AO Subtelny, SW Eichhorn, GR Chen, H Sive… - Nature, 2014 - nature.com
Poly (A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but
difficulties in globally measuring poly (A)-tail lengths have impeded greater understanding of …
difficulties in globally measuring poly (A)-tail lengths have impeded greater understanding of …
Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells
Cellular RNA levels are determined by the interplay of RNA production, processing and
degradation. However, because most studies of RNA regulation do not distinguish the …
degradation. However, because most studies of RNA regulation do not distinguish the …
Studying and modelling dynamic biological processes using time-series gene expression data
Biological processes are often dynamic, thus researchers must monitor their activity at
multiple time points. The most abundant source of information regarding such dynamic …
multiple time points. The most abundant source of information regarding such dynamic …
Non-invasive measurement of mRNA decay reveals translation initiation as the major determinant of mRNA stability
The cytoplasmic abundance of mRNAs is strictly controlled through a balance of production
and degradation. Whereas the control of mRNA synthesis through transcription has been …
and degradation. Whereas the control of mRNA synthesis through transcription has been …
[HTML][HTML] Gene expression is circular: factors for mRNA degradation also foster mRNA synthesis
Maintaining proper mRNA levels is a key aspect in the regulation of gene expression. The
balance between mRNA synthesis and decay determines these levels. We demonstrate that …
balance between mRNA synthesis and decay determines these levels. We demonstrate that …
Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast
To obtain rates of mRNA synthesis and decay in yeast, we established dynamic
transcriptome analysis (DTA). DTA combines non‐perturbing metabolic RNA labeling with …
transcriptome analysis (DTA). DTA combines non‐perturbing metabolic RNA labeling with …
Sequencing metabolically labeled transcripts in single cells reveals mRNA turnover strategies
The regulation of messenger RNA levels in mammalian cells can be achieved by the
modulation of synthesis and degradation rates. Metabolic RNA-labeling experiments in bulk …
modulation of synthesis and degradation rates. Metabolic RNA-labeling experiments in bulk …
Global analysis of eukaryotic mRNA degradation reveals Xrn1-dependent buffering of transcript levels
The rates of mRNA synthesis and degradation determine cellular mRNA levels and can be
monitored by comparative dynamic transcriptome analysis (cDTA) that uses nonperturbing …
monitored by comparative dynamic transcriptome analysis (cDTA) that uses nonperturbing …