Binuclear metallohydrolases

DE Wilcox - Chemical Reviews, 1996 - ACS Publications
Metabolic and signaling biochemical pathways have numerous steps that involve the
hydrolytic cleavage of peptide or phosphate ester bonds. Although both types of bonds are …

Two‐metal ion catalysis in enzymatic Acyl‐and phosphoryl‐transfer reactions

N Sträter, WN Lipscomb, T Klabunde… - … International Edition in …, 1996 - Wiley Online Library
Numerous studies, both in enzymatic and nonenzymatic catalysis, have been undertaken to
understand the way by which metal ions, especially zinc ions, promote the hydrolysis of …

Biomolecular interactions and tools for their recognition: focus on the quartz crystal microbalance and its diverse surface chemistries and applications

CI Cheng, YP Chang, YH Chu - Chemical Society Reviews, 2012 - pubs.rsc.org
Interactions between molecules are ubiquitous and occur in our bodies, the food we eat, the
air we breathe, and myriad additional contexts. Although numerous tools are available for …

Use of plasmon coupling to reveal the dynamics of DNA bending and cleavage by single EcoRV restriction enzymes

BM Reinhard, S Sheikholeslami… - Proceedings of the …, 2007 - National Acad Sciences
Pairs of Au nanoparticles have recently been proposed as “plasmon rulers” based on the
dependence of their light scattering on the interparticle distance. Preliminary work has …

Recognition and cleavage of DNA by type‐II restriction endonucleases

A **oud, A Jeltsch - European Journal of Biochemistry, 1997 - Wiley Online Library
Restriction endonucleases are enzymes which recognize short DNA sequences and cleave
the DNA in both strands. Depending on the enzymological properties different types are …

[HTML][HTML] Crystal structure of PI-SceI, a homing endonuclease with protein splicing activity

X Duan, FS Gimble, FA Quiocho - Cell, 1997 - cell.com
PI-SceI is a bifunctional yeast protein that propagates its mobile gene by catalyzing protein
splicing and site-specific DNA double-strand cleavage. Here, we report the 2.4 Å crystal …

Statistical modeling and analysis of the LAGLIDADG family of site-specific endonucleases and identification of an intein that encodes a site-specific endonuclease of …

JZ Dalgaard, AJ Klar, MJ Moser, WR Holley… - Nucleic acids …, 1997 - academic.oup.com
The LAGLIDADG and HNH families of site-specific DNA endonucleases encoded by viruses,
bacteriophages as well as archaeal, eucaryotic nuclear and organellar genomes are …

Crowding effects on EcoRV kinetics and binding

JR Wenner, VA Bloomfield - Biophysical journal, 1999 - cell.com
The cytosol of the cell contains high concentrations of small and large macromolecules, but
experimental data are often obtained in dilute solutions that do not reflect in vivo conditions …

Metal ion-mediated substrate-assisted catalysis in type II restriction endonucleases

NC Horton, KJ Newberry… - Proceedings of the …, 1998 - National Acad Sciences
The 2.15-Å resolution cocrystal structure of Eco RV endonuclease mutant T93A complexed
with DNA and Ca2+ ions reveals two divalent metals bound in one of the active sites. One of …

TheSfiI Restriction Endonuclease Makes a Four-strand DNA Break at Two Copies of its Recognition Sequence

LM Wentzell, TJ Nobbs, SE Halford - Journal of molecular biology, 1995 - Elsevier
TheSfiI endonuclease cleaves DNA by a mechanism that differs from other restriction
enzymes. While most restriction enzymes are dimeric proteins that interact with a single DNA …