Artificial intelligence in drug discovery: applications and techniques

J Deng, Z Yang, I Ojima, D Samaras… - Briefings in …, 2022 - academic.oup.com
Artificial intelligence (AI) has been transforming the practice of drug discovery in the past
decade. Various AI techniques have been used in many drug discovery applications, such …

Improving molecular contrastive learning via faulty negative mitigation and decomposed fragment contrast

Y Wang, R Magar, C Liang… - Journal of Chemical …, 2022 - ACS Publications
Deep learning has been a prevalence in computational chemistry and widely implemented
in molecular property predictions. Recently, self-supervised learning (SSL), especially …

Multi-modal molecule structure–text model for text-based retrieval and editing

S Liu, W Nie, C Wang, J Lu, Z Qiao, L Liu… - Nature Machine …, 2023 - nature.com
There is increasing adoption of artificial intelligence in drug discovery. However, existing
studies use machine learning to mainly utilize the chemical structures of molecules but …

Uni-mol: A universal 3d molecular representation learning framework

G Zhou, Z Gao, Q Ding, H Zheng, H Xu, Z Wei, L Zhang… - 2023 - chemrxiv.org
Molecular representation learning (MRL) has gained tremendous attention due to its critical
role in learning from limited supervised data for applications like drug design. In most MRL …

Pre-training molecular graph representation with 3d geometry

S Liu, H Wang, W Liu, J Lasenby, H Guo… - arxiv preprint arxiv …, 2021 - arxiv.org
Molecular graph representation learning is a fundamental problem in modern drug and
material discovery. Molecular graphs are typically modeled by their 2D topological …

Geometry-enhanced molecular representation learning for property prediction

X Fang, L Liu, J Lei, D He, S Zhang, J Zhou… - Nature Machine …, 2022 - nature.com
Effective molecular representation learning is of great importance to facilitate molecular
property prediction. Recent advances for molecular representation learning have shown …

Molecular contrastive learning of representations via graph neural networks

Y Wang, J Wang, Z Cao… - Nature Machine …, 2022 - nature.com
Molecular machine learning bears promise for efficient molecular property prediction and
drug discovery. However, labelled molecule data can be expensive and time consuming to …

Accurate prediction of molecular properties and drug targets using a self-supervised image representation learning framework

X Zeng, H **ang, L Yu, J Wang, K Li… - Nature Machine …, 2022 - nature.com
The clinical efficacy and safety of a drug is determined by its molecular properties and
targets in humans. However, proteome-wide evaluation of all compounds in humans, or …

Large-scale chemical language representations capture molecular structure and properties

J Ross, B Belgodere, V Chenthamarakshan… - Nature Machine …, 2022 - nature.com
Abstract Models based on machine learning can enable accurate and fast molecular
property predictions, which is of interest in drug discovery and material design. Various …

[HTML][HTML] A gentle introduction to graph neural networks

B Sanchez-Lengeling, E Reif, A Pearce, AB Wiltschko - Distill, 2021 - staging.distill.pub
A Gentle Introduction to Graph Neural Networks Distill About Prize Submit A Gentle Introduction
to Graph Neural Networks Neural networks have been adapted to leverage the structure and …