Integrating ChIP-seq with other functional genomics data
Transcription is regulated by transcription factor (TF) binding at promoters and distal
regulatory elements and histone modifications that control the accessibility of these …
regulatory elements and histone modifications that control the accessibility of these …
Transcriptional determination and functional specificity of myeloid cells: making sense of diversity
S Monticelli, G Natoli - Nature Reviews Immunology, 2017 - nature.com
Early responses to invading pathogens and to non-microbial danger signals are mediated
by different innate immune and parenchymal tissue cells, which are able to respond to a …
by different innate immune and parenchymal tissue cells, which are able to respond to a …
Circadian entrainment triggers maturation of human in vitro islets
JR Alvarez-Dominguez, J Donaghey, N Rasouli… - Cell stem cell, 2020 - cell.com
Stem-cell-derived tissues could transform disease research and therapy, yet most methods
generate functionally immature products. We investigate how human pluripotent stem cells …
generate functionally immature products. We investigate how human pluripotent stem cells …
Leveraging chromatin accessibility for transcriptional regulatory network inference in T Helper 17 Cells
Transcriptional regulatory networks (TRNs) provide insight into cellular behavior by
describing interactions between transcription factors (TFs) and their gene targets. The assay …
describing interactions between transcription factors (TFs) and their gene targets. The assay …
The accessible chromatin landscape of lipopolysaccharide-induced systemic inflammatory response identifying epigenome signatures and transcription regulatory …
Lipopolysaccharide (LPS) can induce systemic inflammatory response (SIR) in animals.
Understanding the regulatory mechanism of SIR and therapies to ensure healthy growth is …
Understanding the regulatory mechanism of SIR and therapies to ensure healthy growth is …
Integrated multi-omics reveals anaplerotic rewiring in methylmalonyl-CoA mutase deficiency
Methylmalonic aciduria (MMA) is an inborn error of metabolism with multiple monogenic
causes and a poorly understood pathogenesis, leading to the absence of effective causal …
causes and a poorly understood pathogenesis, leading to the absence of effective causal …
Map** the developmental trajectory of human astrocytes reveals divergence in glioblastoma
C Sojka, HLV Wang, TN Bhatia, Y Li, P Chopra… - Nature Cell …, 2025 - nature.com
Glioblastoma (GBM) is defined by heterogeneous and resilient cell populations that closely
reflect neurodevelopmental cell types. Although it is clear that GBM echoes early and …
reflect neurodevelopmental cell types. Although it is clear that GBM echoes early and …
Epigenetic regulation of axon regeneration and glial activation in injury responses
Injury to the nervous system triggers a multicellular response in which epigenetic
mechanisms play an important role in regulating cell type-specific transcriptional changes …
mechanisms play an important role in regulating cell type-specific transcriptional changes …
Epigenetic regulation of immune cells in systemic lupus erythematosus: insight from chromatin accessibility
ZX Gao, T He, P Zhang, X Hu, M Ge, YQ Xu… - Expert Opinion on …, 2024 - Taylor & Francis
ABSTRACT Introduction Systemic Lupus Erythematosus (SLE) is a multi-dimensional
autoimmune disease involving numerous tissues throughout the body. The chromatin …
autoimmune disease involving numerous tissues throughout the body. The chromatin …
D evelopmental C hromatin R estriction of P ro‐G rowth G ene N etworks A cts as an E pigenetic B arrier to A xon R egeneration in C ortical N eurons
Axon regeneration in the central nervous system is prevented in part by a developmental
decline in the intrinsic regenerative ability of maturing neurons. This loss of axon growth …
decline in the intrinsic regenerative ability of maturing neurons. This loss of axon growth …