A review of bioinformatic pipeline frameworks
J Leipzig - Briefings in bioinformatics, 2017 - academic.oup.com
High-throughput bioinformatic analyses increasingly rely on pipeline frameworks to process
sequence and metadata. Modern implementations of these frameworks differ on three key …
sequence and metadata. Modern implementations of these frameworks differ on three key …
A comprehensive overview of lncRNA annotation resources
Long noncoding RNAs (lncRNAs) are emerging as a class of important regulators
participating in various biological functions and disease processes. With the widespread …
participating in various biological functions and disease processes. With the widespread …
Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database
Background Microbial inhabitants of soils are important to ecosystem and planetary
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …
Qos aggregation for web service composition using workflow patterns
MC Jaeger, G Rojec-Goldmann… - Proceedings. Eighth IEEE …, 2004 - ieeexplore.ieee.org
Contributions in the field of Web services have identified that (a) finding matches between
semantic descriptions of advertised and requested services and (b) nonfunctional …
semantic descriptions of advertised and requested services and (b) nonfunctional …
Mashup: making serverless computing useful for hpc workflows via hybrid execution
This work introduces Mashup, a novel strategy to leverage serverless computing model for
executing scientific workflows in a hybrid fashion by taking advantage of both the traditional …
executing scientific workflows in a hybrid fashion by taking advantage of both the traditional …
[HTML][HTML] Big data handling mechanisms in the healthcare applications: A comprehensive and systematic literature review
A Pashazadeh, NJ Navimipour - Journal of biomedical informatics, 2018 - Elsevier
Healthcare provides many services such as diagnosing, treatment, prevention of diseases,
illnesses, injuries, and other physical and mental disorders. Large-scale distributed data …
illnesses, injuries, and other physical and mental disorders. Large-scale distributed data …
Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv
Background The automation of data analysis in the form of scientific workflows has become
a widely adopted practice in many fields of research. Computationally driven data-intensive …
a widely adopted practice in many fields of research. Computationally driven data-intensive …
The draft genome of blunt snout bream (Megalobrama amblycephala) reveals the development of intermuscular bone and adaptation to herbivorous diet
H Liu, C Chen, Z Gao, J Min, Y Gu, J Jian, X Jiang… - …, 2017 - academic.oup.com
The blunt snout bream Megalobrama amblycephala is the economically most important
cyprinid fish species. As an herbivore, it can be grown by eco-friendly and resource …
cyprinid fish species. As an herbivore, it can be grown by eco-friendly and resource …
Identifying opportunities for workflow automation in health care: lessons learned from other industries
Background Workflow automation, which involves identifying sequences of tasks that can be
streamlined by using technology and modern computing, offers opportunities to address the …
streamlined by using technology and modern computing, offers opportunities to address the …
Daydream: Executing dynamic scientific workflows on serverless platforms with hot starts
HPC applications are increasingly being designed as dynamic workflows for the ease of
development and scaling. This work demonstrates how the serverless computing model can …
development and scaling. This work demonstrates how the serverless computing model can …