A review of bioinformatic pipeline frameworks

J Leipzig - Briefings in bioinformatics, 2017 - academic.oup.com
High-throughput bioinformatic analyses increasingly rely on pipeline frameworks to process
sequence and metadata. Modern implementations of these frameworks differ on three key …

A comprehensive overview of lncRNA annotation resources

J Xu, J Bai, X Zhang, Y Lv, Y Gong, L Liu… - Briefings in …, 2017 - academic.oup.com
Long noncoding RNAs (lncRNAs) are emerging as a class of important regulators
participating in various biological functions and disease processes. With the widespread …

Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database

A Bissett, A Fitzgerald, T Meintjes, PM Mele, F Reith… - GigaScience, 2016 - Springer
Background Microbial inhabitants of soils are important to ecosystem and planetary
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …

Qos aggregation for web service composition using workflow patterns

MC Jaeger, G Rojec-Goldmann… - Proceedings. Eighth IEEE …, 2004 - ieeexplore.ieee.org
Contributions in the field of Web services have identified that (a) finding matches between
semantic descriptions of advertised and requested services and (b) nonfunctional …

Mashup: making serverless computing useful for hpc workflows via hybrid execution

RB Roy, T Patel, V Gadepally, D Tiwari - Proceedings of the 27th ACM …, 2022 - dl.acm.org
This work introduces Mashup, a novel strategy to leverage serverless computing model for
executing scientific workflows in a hybrid fashion by taking advantage of both the traditional …

[HTML][HTML] Big data handling mechanisms in the healthcare applications: A comprehensive and systematic literature review

A Pashazadeh, NJ Navimipour - Journal of biomedical informatics, 2018 - Elsevier
Healthcare provides many services such as diagnosing, treatment, prevention of diseases,
illnesses, injuries, and other physical and mental disorders. Large-scale distributed data …

Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv

FZ Khan, S Soiland-Reyes, RO Sinnott, A Lonie… - …, 2019 - academic.oup.com
Background The automation of data analysis in the form of scientific workflows has become
a widely adopted practice in many fields of research. Computationally driven data-intensive …

The draft genome of blunt snout bream (Megalobrama amblycephala) reveals the development of intermuscular bone and adaptation to herbivorous diet

H Liu, C Chen, Z Gao, J Min, Y Gu, J Jian, X Jiang… - …, 2017 - academic.oup.com
The blunt snout bream Megalobrama amblycephala is the economically most important
cyprinid fish species. As an herbivore, it can be grown by eco-friendly and resource …

Identifying opportunities for workflow automation in health care: lessons learned from other industries

T Zayas-Cabán, SN Haque… - Applied Clinical …, 2021 - thieme-connect.com
Background Workflow automation, which involves identifying sequences of tasks that can be
streamlined by using technology and modern computing, offers opportunities to address the …

Daydream: Executing dynamic scientific workflows on serverless platforms with hot starts

RB Roy, T Patel, D Tiwari - SC22: International Conference for …, 2022 - ieeexplore.ieee.org
HPC applications are increasingly being designed as dynamic workflows for the ease of
development and scaling. This work demonstrates how the serverless computing model can …