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Amyloid formation as a protein phase transition
The formation of amyloid fibrils is a general class of protein self-assembly behaviour, which
is associated with both functional biology and the development of a number of disorders …
is associated with both functional biology and the development of a number of disorders …
Physics-based computational and theoretical approaches to intrinsically disordered proteins
Highlights•Liquid-liquid phase separation underlies the formation of membraneless
organelles within cells.•Theory and molecular simulations help to relate interactions at the …
organelles within cells.•Theory and molecular simulations help to relate interactions at the …
RNAs undergo phase transitions with lower critical solution temperatures
Co-phase separation of RNAs and RNA-binding proteins drives the biogenesis of
ribonucleoprotein granules. RNAs can also undergo phase transitions in the absence of …
ribonucleoprotein granules. RNAs can also undergo phase transitions in the absence of …
Comparative roles of charge, π, and hydrophobic interactions in sequence-dependent phase separation of intrinsically disordered proteins
Endeavoring toward a transferable, predictive coarse-grained explicit-chain model for
biomolecular condensates underlain by liquid–liquid phase separation (LLPS) of proteins …
biomolecular condensates underlain by liquid–liquid phase separation (LLPS) of proteins …
Determinants that enable disordered protein assembly into discrete condensed phases
Cells harbour numerous mesoscale membraneless compartments that house specific
biochemical processes and perform distinct cellular functions. These protein-and RNA-rich …
biochemical processes and perform distinct cellular functions. These protein-and RNA-rich …
The protein folding problem: the role of theory
The protein folding problem was first articulated as question of how order arose from
disorder in proteins: How did the various native structures of proteins arise from interatomic …
disorder in proteins: How did the various native structures of proteins arise from interatomic …
Tie-line analysis reveals interactions driving heteromolecular condensate formation
Phase separation of biomolecules gives rise to membraneless organelles that contribute to
the spatiotemporal organization of the cell. In most cases, such biomolecular condensates …
the spatiotemporal organization of the cell. In most cases, such biomolecular condensates …
[HTML][HTML] On the potential of machine learning to examine the relationship between sequence, structure, dynamics and function of intrinsically disordered proteins
Intrinsically disordered proteins (IDPs) constitute a broad set of proteins with few uniting and
many diverging properties. IDPs—and intrinsically disordered regions (IDRs) interspersed …
many diverging properties. IDPs—and intrinsically disordered regions (IDRs) interspersed …
Rules of physical mathematics govern intrinsically disordered proteins
In stark contrast to foldable proteins with a unique folded state, intrinsically disordered
proteins and regions (IDPs) persist in perpetually disordered ensembles. Yet an IDP …
proteins and regions (IDPs) persist in perpetually disordered ensembles. Yet an IDP …
The molecular grammar of protein disorder guiding genome-binding locations
F Jonas, M Carmi, B Krupkin, J Steinberger… - Nucleic acids …, 2023 - academic.oup.com
Intrinsically disordered regions (IDRs) direct transcription factors (TFs) towards selected
genomic occurrences of their binding motif, as exemplified by budding yeast's Msn2 …
genomic occurrences of their binding motif, as exemplified by budding yeast's Msn2 …