Bacterial transcription terminators: the RNA 3′-end chronicles

JM Peters, AD Vangeloff, R Landick - Journal of molecular biology, 2011 - Elsevier
The process of transcription termination is essential to proper expression of bacterial genes
and, in many cases, to the regulation of bacterial gene expression. Two types of bacterial …

High-resolution, single-molecule measurements of biomolecular motion

WJ Greenleaf, MT Woodside… - Annu. Rev. Biophys …, 2007 - annualreviews.org
Many biologically important macromolecules undergo motions that are essential to their
function. Biophysical techniques can now resolve the motions of single molecules down to …

Optical tweezers analysis of DNA–protein complexes

I Heller, TP Hoekstra, GA King, EJG Peterman… - Chemical …, 2014 - ACS Publications
Cellular DNA is continuously engaged in a molecular dance with many accessory proteins.
These proteins are responsible for orchestrating the storage, maintenance, and transfer of …

Direct observation of hierarchical folding in single riboswitch aptamers

WJ Greenleaf, KL Frieda, DAN Foster, MT Woodside… - Science, 2008 - science.org
Riboswitches regulate genes through structural changes in ligand-binding RNA aptamers.
With the use of an optical-trap** assay based on in situ transcription by a molecule of RNA …

Single-molecule approach to molecular biology in living bacterial cells

XS **e, PJ Choi, GW Li, NK Lee, G Lia - Annu. Rev. Biophys., 2008 - annualreviews.org
Recent developments on fluorescent proteins and microscopy techniques have allowed the
probing of single molecules in a living bacterial cell with high specificity, millisecond time …

Stochastic mechano-chemical kinetics of molecular motors: a multidisciplinary enterprise from a physicist's perspective

D Chowdhury - Physics Reports, 2013 - Elsevier
A molecular motor is made of either a single macromolecule or a macromolecular complex.
Just like their macroscopic counterparts, molecular motors “transduce” input energy into …

Direct observation of cotranscriptional folding in an adenine riboswitch

KL Frieda, SM Block - Science, 2012 - science.org
Growing RNA chains fold cotranscriptionally as they are synthesized by RNA polymerase.
Riboswitches, which regulate gene expression by adopting alternative RNA folds, are …

Single-molecule analysis and engineering of DNA motors

S Mohapatra, CT Lin, XA Feng, A Basu, T Ha - Chemical Reviews, 2019 - ACS Publications
Molecular motors are diverse enzymes that transduce chemical energy into mechanical
work and, in doing so, perform critical cellular functions such as DNA replication and …

[HTML][HTML] Revisiting the central dogma one molecule at a time

C Bustamante, W Cheng, YX Mejia - Cell, 2011 - cell.com
The faithful relay and timely expression of genetic information depend on specialized
molecular machines, many of which function as nucleic acid translocases. The emergence …

Single-molecule studies of RNA polymerase: motoring along

KM Herbert, WJ Greenleaf, SM Block - Annu. Rev. Biochem., 2008 - annualreviews.org
Single-molecule techniques have advanced our understanding of transcription by RNA
polymerase (RNAP). A new arsenal of approaches, including single-molecule fluorescence …