Metrics reloaded: recommendations for image analysis validation

L Maier-Hein, A Reinke, P Godau, MD Tizabi… - Nature …, 2024 - nature.com
Increasing evidence shows that flaws in machine learning (ML) algorithm validation are an
underestimated global problem. In biomedical image analysis, chosen performance metrics …

Deep interactive segmentation of medical images: A systematic review and taxonomy

Z Marinov, PF Jäger, J Egger, J Kleesiek… - IEEE transactions on …, 2024 - ieeexplore.ieee.org
Interactive segmentation is a crucial research area in medical image analysis aiming to
boost the efficiency of costly annotations by incorporating human feedback. This feedback …

Checklist for artificial intelligence in medical imaging (CLAIM): 2024 update

AS Tejani, ME Klontzas, AA Gatti, JT Mongan… - Radiology: Artificial …, 2024 - pubs.rsna.org
Checklist for Artificial Intelligence in Medical Imaging (CLAIM): 2024 Update | Radiology:
Artificial Intelligence RSNA "skipMainNavigation" closeDrawerMenuopenDrawerMenu Home …

Similarity of neural network models: A survey of functional and representational measures

M Klabunde, T Schumacher, M Strohmaier… - arxiv preprint arxiv …, 2023 - arxiv.org
Measuring similarity of neural networks to understand and improve their behavior has
become an issue of great importance and research interest. In this survey, we provide a …

nnmamba: 3d biomedical image segmentation, classification and landmark detection with state space model

H Gong, L Kang, Y Wang, X Wan, H Li - arxiv preprint arxiv:2402.03526, 2024 - arxiv.org
In the field of biomedical image analysis, the quest for architectures capable of effectively
capturing long-range dependencies is paramount, especially when dealing with 3D image …

MarShie: a clearing protocol for 3D analysis of single cells throughout the bone marrow at subcellular resolution

TF Mertens, AT Liebheit, J Ehl, R Köhler… - Nature …, 2024 - nature.com
Analyzing immune cell interactions in the bone marrow is vital for understanding
hematopoiesis and bone homeostasis. Three-dimensional analysis of the complete, intact …

Totalsegmentator mri: Sequence-independent segmentation of 59 anatomical structures in mr images

TA D'Antonoli, LK Berger, AK Indrakanti… - arxiv preprint arxiv …, 2024 - arxiv.org
Purpose: To develop an open-source and easy-to-use segmentation model that can
automatically and robustly segment most major anatomical structures in MR images …

[HTML][HTML] CarveMix: a simple data augmentation method for brain lesion segmentation

X Zhang, C Liu, N Ou, X Zeng, Z Zhuo, Y Duan, X **ong… - NeuroImage, 2023 - Elsevier
Brain lesion segmentation provides a valuable tool for clinical diagnosis and research, and
convolutional neural networks (CNNs) have achieved unprecedented success in the …

In silico labeling in cell biology: Potential and limitations

N Elmalam, LB Nedava, A Zaritsky - Current Opinion in Cell Biology, 2024 - Elsevier
In silico labeling is the computational cross-modality image translation where the output
modality is a subcellular marker that is not specifically encoded in the input image, for …

Quality Assured: Rethinking Annotation Strategies in Imaging AI

T Rädsch, A Reinke, V Weru, MD Tizabi… - … on Computer Vision, 2024 - Springer
This paper does not describe a novel method. Instead, it studies an essential foundation for
reliable benchmarking and ultimately real-world application of AI-based image analysis …