The recent rapid expansion of multidrug resistant Ural lineage Mycobacterium tuberculosis in Moldova

MH Chitwood, C Colijn, C Yang, V Crudu… - Nature …, 2024 - nature.com
The projected trajectory of multidrug resistant tuberculosis (MDR-TB) epidemics depends on
the reproductive fitness of circulating strains of MDR M. tuberculosis (Mtb). Previous efforts to …

How to validate a Bayesian evolutionary model

FK Mendes, R Bouckaert, LM Carvalho… - Systematic …, 2025 - academic.oup.com
Biology has become a highly mathematical discipline in which probabilistic models play a
central role. As a result, research in the biological sciences is now dependent on …

Integrating contact tracing data to enhance outbreak phylodynamic inference: a deep learning approach

R **, and teaching evolutionary models
FK Mendes, MJ Landis - Systematic Biology, 2024 - academic.oup.com
We introduce PhyloJunction, a computational framework designed to facilitate the
prototy**, testing, and characterization of evolutionary models. PhyloJunction is …