IoT, big data, and artificial intelligence in agriculture and food industry
Internet of Things (IoT) results in a massive amount of streaming data, often referred to as
“big data,” which brings new opportunities to monitor agricultural and food processes …
“big data,” which brings new opportunities to monitor agricultural and food processes …
A genomic overview of the population structure of Salmonella
For many decades, Salmonella enterica has been subdivided by serological properties into
serovars or further subdivided for epidemiological tracing by a variety of diagnostic tests with …
serovars or further subdivided for epidemiological tracing by a variety of diagnostic tests with …
Validating the AMRFinder tool and resistance gene database by using antimicrobial resistance genotype-phenotype correlations in a collection of isolates
M Feldgarden, V Brover, DH Haft… - Antimicrobial agents …, 2019 - Am Soc Microbiol
Antimicrobial resistance (AMR) is a major public health problem that requires publicly
available tools for rapid analysis. To identify AMR genes in whole-genome sequences, the …
available tools for rapid analysis. To identify AMR genes in whole-genome sequences, the …
SKESA: strategic k-mer extension for scrupulous assemblies
A Souvorov, R Agarwala, DJ Lipman - Genome biology, 2018 - Springer
SKESA is a DeBruijn graph-based de-novo assembler designed for assembling reads of
microbial genomes sequenced using Illumina. Comparison with SPAdes and MegaHit …
microbial genomes sequenced using Illumina. Comparison with SPAdes and MegaHit …
[HTML][HTML] Whole genome sequencing options for bacterial strain ty** and epidemiologic analysis based on single nucleotide polymorphism versus gene-by-gene …
Background Whole genome sequence (WGS)-based strain ty** finds increasing use in the
epidemiologic analysis of bacterial pathogens in both public health as well as more …
epidemiologic analysis of bacterial pathogens in both public health as well as more …
The use of next generation sequencing for improving food safety: Translation into practice
Abstract Next Generation Sequencing (NGS) combined with powerful bioinformatic
approaches are revolutionising food microbiology. Whole genome sequencing (WGS) of …
approaches are revolutionising food microbiology. Whole genome sequencing (WGS) of …
[HTML][HTML] Pathogen genomics in public health
GL Armstrong, DR MacCannell, J Taylor… - … England Journal of …, 2019 - Mass Medical Soc
Rapid advances in DNA sequencing technology (“next-generation sequencing”) have
inspired optimism about the potential of human genomics for “precision medicine.” …
inspired optimism about the potential of human genomics for “precision medicine.” …
PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance
C Nadon, I Van Walle, P Gerner-Smidt… - …, 2017 - eurosurveillance.org
PulseNet International is a global network dedicated to laboratory-based surveillance for
food-borne diseases. The network comprises the national and regional laboratory networks …
food-borne diseases. The network comprises the national and regional laboratory networks …
Metagenomics: the next culture-independent game changer
A trend towards the abandonment of obtaining pure culture isolates in frontline laboratories
is at a crossroads with the ability of public health agencies to perform their basic mandate of …
is at a crossroads with the ability of public health agencies to perform their basic mandate of …
Smart traceability for food safety
Current food production faces a tremendous challenge due to the growing human
population. The global population is estimated to reach 9 billion by 2050 with 70% more …
population. The global population is estimated to reach 9 billion by 2050 with 70% more …