Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool

I Letunic, P Bork - Nucleic acids research, 2024‏ - academic.oup.com
Abstract The Interactive Tree Of Life (https://itol. embl. de) is an online tool for the
management, display, annotation and manipulation of phylogenetic and other trees. It is …

Tree Visualization By One Table (tvBOT): a web application for visualizing, modifying and annotating phylogenetic trees

J **e, Y Chen, G Cai, R Cai, Z Hu… - Nucleic acids …, 2023‏ - academic.oup.com
Abstract tvBOT is a user-friendly and efficient web application for visualizing, modifying, and
annotating phylogenetic trees. It is highly efficient in data preparation without requiring …

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

I Letunic, P Bork - Nucleic acids research, 2021‏ - academic.oup.com
Abstract The Interactive Tree Of Life (https://itol. embl. de) is an online tool for the display,
manipulation and annotation of phylogenetic and other trees. It is freely available and open …

TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy

JP Meier-Kolthoff, M Göker - Nature communications, 2019‏ - nature.com
Microbial taxonomy is increasingly influenced by genome-based computational methods.
Yet such analyses can be complex and require expert knowledge. Here we introduce TYGS …

Evolview v3: a webserver for visualization, annotation, and management of phylogenetic trees

B Subramanian, S Gao, MJ Lercher, S Hu… - Nucleic acids …, 2019‏ - academic.oup.com
Evolview is an interactive tree visualization tool designed to help researchers in visualizing
phylogenetic trees and in annotating these with additional information. It offers the user with …

A comprehensive phylogenomic platform for exploring the angiosperm tree of life

WJ Baker, P Bailey, V Barber, A Barker… - Systematic …, 2022‏ - academic.oup.com
The tree of life is the fundamental biological roadmap for navigating the evolution and
properties of life on Earth, and yet remains largely unknown. Even angiosperms (flowering …

PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics

M Van Bel, T Diels, E Vancaester, L Kreft… - Nucleic acids …, 2018‏ - academic.oup.com
Abstract PLAZA (https://bioinformatics. psb. ugent. be/plaza) is a plant-oriented online
resource for comparative, evolutionary and functional genomics. The PLAZA platform …

Gene3D: extensive prediction of globular domains in proteins

TE Lewis, I Sillitoe, N Dawson, SD Lam… - Nucleic acids …, 2018‏ - academic.oup.com
Abstract Gene3D (http://gene3d. biochem. ucl. ac. uk) is a database of globular domain
annotations for millions of available protein sequences. Gene3D has previously featured in …

M1CR0B1AL1Z3R—a user-friendly web server for the analysis of large-scale microbial genomics data

O Avram, D Rapoport, S Portugez… - Nucleic acids …, 2019‏ - academic.oup.com
Large-scale mining and analysis of bacterial datasets contribute to the comprehensive
characterization of complex microbial dynamics within a microbiome and among different …

Redefining piscine lactococcosis

TI Heckman, Z Yazdi, CE Older, MJ Griffin… - Applied and …, 2024‏ - journals.asm.org
Piscine lactococcosis is a significant threat to cultured and wild fish populations worldwide.
The disease typically presents as a per-acute to acute hemorrhagic septicemia causing high …