[HTML][HTML] Networks beyond pairwise interactions: Structure and dynamics

F Battiston, G Cencetti, I Iacopini, V Latora, M Lucas… - Physics reports, 2020 - Elsevier
The complexity of many biological, social and technological systems stems from the richness
of the interactions among their units. Over the past decades, a variety of complex systems …

The structure and dynamics of networks with higher order interactions

S Boccaletti, P De Lellis, CI Del Genio, K Alfaro-Bittner… - Physics Reports, 2023 - Elsevier
All beauty, richness and harmony in the emergent dynamics of a complex system largely
depend on the specific way in which its elementary components interact. The last twenty-five …

Link prediction based on graph neural networks

M Zhang, Y Chen - Advances in neural information …, 2018 - proceedings.neurips.cc
Link prediction is a key problem for network-structured data. Link prediction heuristics use
some score functions, such as common neighbors and Katz index, to measure the likelihood …

Deep learning on graphs: A survey

Z Zhang, P Cui, W Zhu - IEEE Transactions on Knowledge and …, 2020 - ieeexplore.ieee.org
Deep learning has been shown to be successful in a number of domains, ranging from
acoustics, images, to natural language processing. However, applying deep learning to the …

Signal propagation in complex networks

P Ji, J Ye, Y Mu, W Lin, Y Tian, C Hens, M Perc, Y Tang… - Physics reports, 2023 - Elsevier
Signal propagation in complex networks drives epidemics, is responsible for information
going viral, promotes trust and facilitates moral behavior in social groups, enables the …

The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2

JE Pekar, A Magee, E Parker, N Moshiri, K Izhikevich… - Science, 2022 - science.org
Understanding the circumstances that lead to pandemics is important for their prevention.
We analyzed the genomic diversity of severe acute respiratory syndrome coronavirus 2 …

Beyond homophily in graph neural networks: Current limitations and effective designs

J Zhu, Y Yan, L Zhao, M Heimann… - Advances in neural …, 2020 - proceedings.neurips.cc
We investigate the representation power of graph neural networks in the semi-supervised
node classification task under heterophily or low homophily, ie, in networks where …

Learning convolutional neural networks for graphs

M Niepert, M Ahmed, K Kutzkov - … conference on machine …, 2016 - proceedings.mlr.press
Numerous important problems can be framed as learning from graph data. We propose a
framework for learning convolutional neural networks for arbitrary graphs. These graphs …

[HTML][HTML] G3BP1 is a tunable switch that triggers phase separation to assemble stress granules

P Yang, C Mathieu, RM Kolaitis, P Zhang, J Messing… - Cell, 2020 - cell.com
The mechanisms underlying ribonucleoprotein (RNP) granule assembly, including the basis
for establishing and maintaining RNP granules with distinct composition, are unknown. One …

[HTML][HTML] Optical coherence tomography angiography

RF Spaide, JG Fujimoto, NK Waheed, SR Sadda… - Progress in retinal and …, 2018 - Elsevier
Optical coherence tomography (OCT) was one of the biggest advances in ophthalmic
imaging. Building on that platform, OCT angiography (OCTA) provides depth resolved …