Ribosome biogenesis factors—from names to functions

K Dörner, C Ruggeri, I Zemp, U Kutay - The EMBO journal, 2023 - embopress.org
The assembly of ribosomal subunits is a highly orchestrated process that involves a huge
cohort of accessory factors. Most eukaryotic ribosome biogenesis factors were first identified …

Autoimmune diseases and polyamines

WH Brooks - Clinical reviews in allergy & immunology, 2012 - Springer
Genetics and environmental factors have important roles in autoimmune diseases but
neither has given us sufficient understanding of these mysterious diseases. Therefore, we …

Initial genomics of the human nucleolus

A Németh, A Conesa, J Santoyo-Lopez, I Medina… - PLoS …, 2010 - journals.plos.org
We report for the first time the genomics of a nuclear compartment of the eukaryotic cell. 454
sequencing and microarray analysis revealed the pattern of nucleolus-associated chromatin …

Clustering of yeast tRNA genes is mediated by specific association of condensin with tRNA gene transcription complexes

RA Haeusler, M Pratt-Hyatt, PD Good… - Genes & …, 2008 - genesdev.cshlp.org
The 274 tRNA genes in Saccharomyces cerevisiae are scattered throughout the linear maps
of the 16 chromosomes, but the genes are clustered at the nucleolus when compacted in the …

Close association of RNA polymerase II and many transcription factors with Pol III genes

D Raha, Z Wang, Z Moqtaderi, L Wu… - Proceedings of the …, 2010 - National Acad Sciences
Transcription of the eukaryotic genomes is carried out by three distinct RNA polymerases I,
II, and III, whereby each polymerase is thought to independently transcribe a distinct set of …

Human tRNA genes function as chromatin insulators

JR Raab, J Chiu, J Zhu, S Katzman, S Kurukuti… - The EMBO …, 2012 - embopress.org
Insulators help separate active chromatin domains from silenced ones. In yeast, gene
promoters act as insulators to block the spread of Sir and HP1 mediated silencing while in …

Nucleolus and chromatin

C Schöfer, K Weipoltshammer - Histochemistry and cell biology, 2018 - Springer
The nucleolus as site of ribosome biogenesis holds a pivotal role in cell metabolism. It is
composed of ribosomal DNA (rDNA), which is present as tandem arrays located in nucleolus …

Cell biology of the trypanosome genome

JP Daniels, K Gull, B Wickstead - Microbiology and Molecular …, 2010 - Am Soc Microbiol
Trypanosomes are a group of protozoan eukaryotes, many of which are major parasites of
humans and livestock. The genomes of trypanosomes and their modes of gene expression …

Sen1 is a key regulator of transcription-driven conflicts

U Aiello, D Challal, G Wentzinger, A Lengronne… - Molecular Cell, 2022 - cell.com
Cellular homeostasis requires the coordination of several machineries concurrently
engaged in the DNA. Wide-spread transcription can interfere with other processes, and …

Functional nuclear organization of transcription and DNA replication a topographical marriage between chromatin domains and the interchromatin compartment

Y Markaki, M Gunkel, L Schermelleh… - Cold Spring Harbor …, 2010 - symposium.cshlp.org
We studied the nuclear topography of RNA transcription and DNA replication in mammalian
cell types with super-resolution fluorescence microscopy, which offers a resolution beyond …