Gut microbiota metagenomics in aquaculture: factors influencing gut microbiome and its physiological role in fish
Fish gut microbiome confers various effects to the host fish; this includes overall size,
metabolism, feeding behaviour and immune response in the fish. The emergence of …
metabolism, feeding behaviour and immune response in the fish. The emergence of …
The role of bacteria in the caries process: ecological perspectives
N Takahashi, B Nyvad - Journal of dental research, 2011 - journals.sagepub.com
Dental biofilms produce acids from carbohydrates that result in caries. According to the
extended caries ecological hypothesis, the caries process consists of 3 reversible stages …
extended caries ecological hypothesis, the caries process consists of 3 reversible stages …
Enterotypes of the human gut microbiome
Our knowledge of species and functional composition of the human gut microbiome is
rapidly increasing, but it is still based on very few cohorts and little is known about variation …
rapidly increasing, but it is still based on very few cohorts and little is known about variation …
Structure and function of the global ocean microbiome
Microbes are dominant drivers of biogeochemical processes, yet drawing a global picture of
functional diversity, microbial community structure, and their ecological determinants …
functional diversity, microbial community structure, and their ecological determinants …
Stochastic and deterministic assembly processes in subsurface microbial communities
JC Stegen, X Lin, AE Konopka… - The ISME journal, 2012 - academic.oup.com
A major goal of microbial community ecology is to understand the forces that structure
community composition. Deterministic selection by specific environmental factors is …
community composition. Deterministic selection by specific environmental factors is …
Plankton networks driving carbon export in the oligotrophic ocean
The biological carbon pump is the process by which CO2 is transformed to organic carbon
via photosynthesis, exported through sinking particles, and finally sequestered in the deep …
via photosynthesis, exported through sinking particles, and finally sequestered in the deep …
Sequencing and beyond: integrating molecular'omics' for microbial community profiling
High-throughput DNA sequencing has proven invaluable for investigating diverse
environmental and host-associated microbial communities. In this Review, we discuss …
environmental and host-associated microbial communities. In this Review, we discuss …
Metabolic reconstruction for metagenomic data and its application to the human microbiome
Microbial communities carry out the majority of the biochemical activity on the planet, and
they play integral roles in processes including metabolism and immune homeostasis in the …
they play integral roles in processes including metabolism and immune homeostasis in the …
Microbial community profiling for human microbiome projects: tools, techniques, and challenges
M Hamady, R Knight - Genome research, 2009 - genome.cshlp.org
High-throughput sequencing studies and new software tools are revolutionizing microbial
community analyses, yet the variety of experimental and computational methods can be …
community analyses, yet the variety of experimental and computational methods can be …
Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease
The human microbiome plays a key role in a wide range of host-related processes and has
a profound effect on human health. Comparative analyses of the human microbiome have …
a profound effect on human health. Comparative analyses of the human microbiome have …