Correlation between the gut microbiome and neurodegenerative diseases: a review of metagenomics evidence

X Liu, Y Liu, J Liu, H Zhang, C Shan… - Neural Regeneration …, 2024 - journals.lww.com
A growing body of evidence suggests that the gut microbiota contributes to the development
of neurodegenerative diseases via the microbiota-gut-brain axis. As a contributing factor …

Mesophilic and thermophilic viruses are associated with nutrient cycling during hyperthermophilic composting

H Liao, C Liu, C Ai, T Gao, QE Yang, Z Yu… - The ISME …, 2023 - academic.oup.com
While decomposition of organic matter by bacteria plays a major role in nutrient cycling in
terrestrial ecosystems, the significance of viruses remains poorly understood. Here we …

Hidden diversity and potential ecological function of phosphorus acquisition genes in widespread terrestrial bacteriophages

JL Liang, S Feng, J Lu, X Wang, F Li, Y Guo… - Nature …, 2024 - nature.com
Phosphorus (P) limitation of ecosystem processes is widespread in terrestrial habitats. While
a few auxiliary metabolic genes (AMGs) in bacteriophages from aquatic habitats are …

COBRA improves the completeness and contiguity of viral genomes assembled from metagenomes

LX Chen, JF Banfield - Nature Microbiology, 2024 - nature.com
Viruses are often studied using metagenome-assembled sequences, but genome
incompleteness hampers comprehensive and accurate analyses. Contig Overlap Based Re …

Prophage-encoded antibiotic resistance genes are enriched in human-impacted environments

H Liao, C Liu, S Zhou, C Liu, DJ Eldridge, C Ai… - Nature …, 2024 - nature.com
The spread of antibiotic resistance genes (ARGs) poses a substantial threat to human
health. Phage-mediated transduction could exacerbate ARG transmission. While several …

Global diversity and ecological functions of viruses inhabiting oil reservoirs

L An, X Liu, J Wang, J Xu, X Chen, X Liu, B Hu… - Nature …, 2024 - nature.com
Oil reservoirs, being one of the significant subsurface repositories of energy and carbon,
host diverse microbial communities affecting energy production and carbon emissions …

Viruses contribute to microbial diversification in the rumen ecosystem and are associated with certain animal production traits

M Yan, Z Yu - Microbiome, 2024 - Springer
Background The rumen microbiome enables ruminants to digest otherwise indigestible
feedstuffs, thereby facilitating the production of high-quality protein, albeit with suboptimal …

Tundra soil viruses mediate responses of microbial communities to climate warming

M Ji, X Fan, CR Cornell, Y Zhang, MM Yuan, Z Tian… - mbio, 2023 - journals.asm.org
The rise of global temperature causes the degradation of the substantial reserves of carbon
(C) stored in tundra soils, in which microbial processes play critical roles. Viruses are known …

[HTML][HTML] Viral community structure and functional potential vary with lifestyle and altitude in soils of Mt. Everest

Y Zhu, Y Zhang, S Yan, X Chen, S **e - Environment International, 2023 - Elsevier
More and more focus has been placed on the processes by which viruses interact with
bacteria to influence the biogeochemical cycles. The intricacy of soil matrix and the …

Symbiotic virus-bacteria interactions in biological treatment of coking wastewater manipulating bacterial physiological activities

S Zhu, Z Tan, Z Guo, H Zheng, B Zhang, Z Qin, J **e… - Water Research, 2024 - Elsevier
Biological treatment is commonly used in coking wastewater (CWW) treatment. Prokaryotic
microbial communities in CWW treatment have been comprehensively studied. However …