Relation Extraction in underexplored biomedical domains: A diversity-optimised sampling and synthetic data generation approach

M Delmas, M Wysocka, A Freitas - Computational Linguistics, 2024 - direct.mit.edu
The sparsity of labelled data is an obstacle to the development of Relation Extraction (RE)
models and the completion of databases in various biomedical areas. While being of high …

BioBERT-based Deep Learning and Merged ChemProt-DrugProt for Enhanced Biomedical Relation Extraction

BT McInnes, J Tang, D Mahendran… - arxiv preprint arxiv …, 2024 - arxiv.org
This paper presents a methodology for enhancing relation extraction from biomedical texts,
focusing specifically on chemical-gene interactions. Leveraging the BioBERT model and a …

[HTML][HTML] Investigating Cross-Domain Binary Relation Classification in Biomedical Natural Language Processing

A Purpura, N Mulligan, U Kartoun, E Koski… - AMIA Summits on …, 2024 - ncbi.nlm.nih.gov
This paper addresses the challenge of binary relation classification in biomedical Natural
Language Processing (NLP), focusing on diverse domains including gene-disease …

Causal-Evidence Graph for Causal Relation Classification

Y Susanti, K Uchino - Proceedings of the 39th ACM/SIGAPP Symposium …, 2024 - dl.acm.org
This paper aims toward an enhancement for automatic causal relation classification from text
sources. We introduce a Causal Evidence Graph (CEG), which is a graph-structured …

High-throughput Biomedical Relation Extraction for Semi-Structured Web Articles Empowered by Large Language Models

S Zhou, S Yu - arxiv preprint arxiv:2312.08274, 2023 - arxiv.org
Objective: To develop a high-throughput biomedical relation extraction system that takes
advantage of the large language models'(LLMs) reading comprehension ability and …