Regulation of pre-mRNA splicing: roles in physiology and disease, and therapeutic prospects

ME Rogalska, C Vivori, J Valcárcel - Nature Reviews Genetics, 2023 - nature.com
The removal of introns from mRNA precursors and its regulation by alternative splicing are
key for eukaryotic gene expression and cellular function, as evidenced by the numerous …

The causes and consequences of genetic interactions (epistasis)

J Domingo, P Baeza-Centurion… - Annual review of …, 2019 - annualreviews.org
The same mutation can have different effects in different individuals. One important reason
for this is that the outcome of a mutation can depend on the genetic context in which it …

Nucleotide Transformer: building and evaluating robust foundation models for human genomics

H Dalla-Torre, L Gonzalez, J Mendoza-Revilla… - Nature …, 2024 - nature.com
The prediction of molecular phenotypes from DNA sequences remains a longstanding
challenge in genomics, often driven by limited annotated data and the inability to transfer …

Scalable functional assays for the interpretation of human genetic variation

D Tabet, V Parikh, P Mali, FP Roth… - Annual Review of …, 2022 - annualreviews.org
Scalable sequence–function studies have enabled the systematic analysis and cataloging of
hundreds of thousands of coding and noncoding genetic variants in the human genome …

Splicing in the diagnosis of rare disease: advances and challenges

J Lord, D Baralle - Frontiers in genetics, 2021 - frontiersin.org
Mutations which affect splicing are significant contributors to rare disease, but are frequently
overlooked by diagnostic sequencing pipelines. Greater ascertainment of pathogenic …

Splicing at the phase-separated nuclear speckle interface: a model

SE Liao, O Regev - Nucleic acids research, 2021 - academic.oup.com
Phase-separated membraneless bodies play important roles in nucleic acid biology. While
current models for the roles of phase separation largely focus on the compartmentalization …

From computational models of the splicing code to regulatory mechanisms and therapeutic implications

C Capitanchik, OG Wilkins, N Wagner… - Nature Reviews …, 2024 - nature.com
Since the discovery of RNA splicing and its role in gene expression, researchers have
sought a set of rules, an algorithm or a computational model that could predict the splice …

[HTML][HTML] Combinatorial genetics reveals a scaling law for the effects of mutations on splicing

P Baeza-Centurion, B Miñana, JM Schmiedel… - Cell, 2019 - cell.com
Despite a wealth of molecular knowledge, quantitative laws for accurate prediction of
biological phenomena remain rare. Alternative pre-mRNA splicing is an important regulated …

hnRNP H/F drive RNA G-quadruplex-mediated translation linked to genomic instability and therapy resistance in glioblastoma

P Herviou, M Le Bras, L Dumas, C Hieblot… - Nature …, 2020 - nature.com
Abstract RNA G-quadruplexes (RG4s) are four-stranded structures known to control mRNA
translation of cancer relevant genes. RG4 formation is pervasive in vitro but not in cellulo …

Deep mutational scanning: A versatile tool in systematically map** genotypes to phenotypes

H Wei, X Li - Frontiers in Genetics, 2023 - frontiersin.org
Unveiling how genetic variations lead to phenotypic variations is one of the key questions in
evolutionary biology, genetics, and biomedical research. Deep mutational scanning (DMS) …