Regulation of pre-mRNA splicing: roles in physiology and disease, and therapeutic prospects
The removal of introns from mRNA precursors and its regulation by alternative splicing are
key for eukaryotic gene expression and cellular function, as evidenced by the numerous …
key for eukaryotic gene expression and cellular function, as evidenced by the numerous …
The causes and consequences of genetic interactions (epistasis)
The same mutation can have different effects in different individuals. One important reason
for this is that the outcome of a mutation can depend on the genetic context in which it …
for this is that the outcome of a mutation can depend on the genetic context in which it …
Nucleotide Transformer: building and evaluating robust foundation models for human genomics
The prediction of molecular phenotypes from DNA sequences remains a longstanding
challenge in genomics, often driven by limited annotated data and the inability to transfer …
challenge in genomics, often driven by limited annotated data and the inability to transfer …
Scalable functional assays for the interpretation of human genetic variation
Scalable sequence–function studies have enabled the systematic analysis and cataloging of
hundreds of thousands of coding and noncoding genetic variants in the human genome …
hundreds of thousands of coding and noncoding genetic variants in the human genome …
Splicing in the diagnosis of rare disease: advances and challenges
Mutations which affect splicing are significant contributors to rare disease, but are frequently
overlooked by diagnostic sequencing pipelines. Greater ascertainment of pathogenic …
overlooked by diagnostic sequencing pipelines. Greater ascertainment of pathogenic …
Splicing at the phase-separated nuclear speckle interface: a model
Phase-separated membraneless bodies play important roles in nucleic acid biology. While
current models for the roles of phase separation largely focus on the compartmentalization …
current models for the roles of phase separation largely focus on the compartmentalization …
From computational models of the splicing code to regulatory mechanisms and therapeutic implications
Since the discovery of RNA splicing and its role in gene expression, researchers have
sought a set of rules, an algorithm or a computational model that could predict the splice …
sought a set of rules, an algorithm or a computational model that could predict the splice …
[HTML][HTML] Combinatorial genetics reveals a scaling law for the effects of mutations on splicing
Despite a wealth of molecular knowledge, quantitative laws for accurate prediction of
biological phenomena remain rare. Alternative pre-mRNA splicing is an important regulated …
biological phenomena remain rare. Alternative pre-mRNA splicing is an important regulated …
hnRNP H/F drive RNA G-quadruplex-mediated translation linked to genomic instability and therapy resistance in glioblastoma
P Herviou, M Le Bras, L Dumas, C Hieblot… - Nature …, 2020 - nature.com
Abstract RNA G-quadruplexes (RG4s) are four-stranded structures known to control mRNA
translation of cancer relevant genes. RG4 formation is pervasive in vitro but not in cellulo …
translation of cancer relevant genes. RG4 formation is pervasive in vitro but not in cellulo …
Deep mutational scanning: A versatile tool in systematically map** genotypes to phenotypes
H Wei, X Li - Frontiers in Genetics, 2023 - frontiersin.org
Unveiling how genetic variations lead to phenotypic variations is one of the key questions in
evolutionary biology, genetics, and biomedical research. Deep mutational scanning (DMS) …
evolutionary biology, genetics, and biomedical research. Deep mutational scanning (DMS) …