ABA metabolism and homeostasis in seed dormancy and germination

N Sano, A Marion-Poll - International Journal of Molecular Sciences, 2021 - mdpi.com
Abscisic acid (ABA) is a key hormone that promotes dormancy during seed development on
the mother plant and after seed dispersal participates in the control of dormancy release and …

Sequencing pools of individuals—mining genome-wide polymorphism data without big funding

C Schlötterer, R Tobler, R Kofler, V Nolte - Nature Reviews Genetics, 2014 - nature.com
The analysis of polymorphism data is becoming increasingly important as a complementary
tool to classical genetic analyses. Nevertheless, despite plunging sequencing costs …

RaGOO: fast and accurate reference-guided scaffolding of draft genomes

M Alonge, S Soyk, S Ramakrishnan, X Wang… - Genome biology, 2019 - Springer
We present RaGOO, a reference-guided contig ordering and orienting tool that leverages
the speed and sensitivity of Minimap2 to accurately achieve chromosome-scale assemblies …

The WRKY transcription factor family in model plants and crops

F Chen, Y Hu, A Vannozzi, K Wu, H Cai… - Critical Reviews in …, 2017 - Taylor & Francis
The WRKY gene family in flowering plants encodes a large group of transcription factors
(TFs) that play essential roles in diverse stress responses, developmental, and physiological …

Repetitive DNA and next-generation sequencing: computational challenges and solutions

TJ Treangen, SL Salzberg - Nature Reviews Genetics, 2012 - nature.com
Repetitive DNA sequences are abundant in a broad range of species, from bacteria to
mammals, and they cover nearly half of the human genome. Repeats have always …

Phenomics–technologies to relieve the phenoty** bottleneck

RT Furbank, M Tester - Trends in plant science, 2011 - cell.com
Global agriculture is facing major challenges to ensure global food security, such as the
need to breed high-yielding crops adapted to future climates and the identification of …

Regulation of heat shock proteins 70 and their role in plant immunity

M Berka, R Kopecká, V Berková… - Journal of …, 2022 - academic.oup.com
Heat shock proteins 70 (HSP70s) are steadily gaining more attention in the field of plant
biotic interactions. Though their regulation and activity in plants are much less well …

Genome-wide association studies of 14 agronomic traits in rice landraces

X Huang, X Wei, T Sang, Q Zhao, QI Feng, Y Zhao… - Nature …, 2010 - nature.com
Uncovering the genetic basis of agronomic traits in crop landraces that have adapted to
various agro-climatic conditions is important to world food security. Here we have …

M ercator: a fast and simple web server for genome scale functional annotation of plant sequence data

M Lohse, A Nagel, T Herter, P May, M Schroda… - 2014 - Wiley Online Library
Next‐generation technologies generate an overwhelming amount of gene sequence data.
Efficient annotation tools are required to make these data amenable to functional genomics …

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm

X Huang, Y Zhao, X Wei, C Li, A Wang, Q Zhao, W Li… - Nature …, 2012 - nature.com
A high-density haplotype map recently enabled a genome-wide association study (GWAS)
in a population of indica subspecies of Chinese rice landraces. Here we extend this …