Criteria for the translation of radiomics into clinically useful tests

EP Huang, JPB O'Connor, LM McShane… - Nature reviews Clinical …, 2023 - nature.com
Computer-extracted tumour characteristics have been incorporated into medical imaging
computer-aided diagnosis (CAD) algorithms for decades. With the advent of radiomics, an …

A comprehensive survey of regulatory network inference methods using single cell RNA sequencing data

H Nguyen, D Tran, B Tran, B Pehlivan… - Briefings in …, 2021 - academic.oup.com
Gene regulatory network is a complicated set of interactions between genetic materials,
which dictates how cells develop in living organisms and react to their surrounding …

Multi-omics data integration using ratio-based quantitative profiling with Quartet reference materials

Y Zheng, Y Liu, J Yang, L Dong, R Zhang, S Tian… - Nature …, 2024 - nature.com
Abstract Characterization and integration of the genome, epigenome, transcriptome,
proteome and metabolome of different datasets is difficult owing to a lack of ground truth …

Diagnostics and correction of batch effects in large‐scale proteomic studies: a tutorial

J Čuklina, CH Lee, EG Williams, T Sajic… - Molecular systems …, 2021 - embopress.org
Advancements in mass spectrometry‐based proteomics have enabled experiments
encompassing hundreds of samples. While these large sample sets deliver much‐needed …

On-Line Analysis of Exhaled Breath: Focus Review

T Bruderer, T Gaisl, MT Gaugg, N Nowak… - Chemical …, 2019 - ACS Publications
On-line analysis of exhaled breath offers insight into a person's metabolism without the need
for sample preparation or sample collection. Due to its noninvasive nature and the possibility …

[HTML][HTML] Metal and essential element concentrations during pregnancy and associations with autism spectrum disorder and attention-deficit/hyperactivity disorder in …

TS Skogheim, KVF Weyde, SM Engel, H Aase… - Environment …, 2021 - Elsevier
Background Prenatal exposure to toxic metals or variations in maternal levels of essential
elements during pregnancy may be a risk factor for neurodevelopmental disorders such as …

[HTML][HTML] Present and future challenges for the investigation of transgenerational epigenetic inheritance

M Fallet, M Blanc, M Di Criscio, P Antczak… - Environment …, 2023 - Elsevier
Epigenetic pathways are essential in different biological processes and in phenotype-
environment interactions in response to different stressors and they can induce phenotypic …

Harmonization strategies for multicenter radiomics investigations

R Da-Ano, D Visvikis, M Hatt - Physics in Medicine & Biology, 2020 - iopscience.iop.org
Carrying out large multicenter studies is one of the key goals to be achieved towards a faster
transfer of the radiomics approach in the clinical setting. This requires large-scale radiomics …

Performance comparison of modified ComBat for harmonization of radiomic features for multicenter studies

R Da-Ano, I Masson, F Lucia, M Doré, P Robin… - Scientific reports, 2020 - nature.com
Multicenter studies are needed to demonstrate the clinical potential value of radiomics as a
prognostic tool. However, variability in scanner models, acquisition protocols and …

Minimizing acquisition-related radiomics variability by image resampling and batch effect correction to allow for large-scale data analysis

M Ligero, O Jordi-Ollero, K Bernatowicz… - European …, 2021 - Springer
Objective To identify CT-acquisition parameters accounting for radiomics variability and to
develop a post-acquisition CT-image correction method to reduce variability and improve …