Revisiting the Crabtree/Warburg effect in a dynamic perspective: a fitness advantage against sugar-induced cell death

E de Alteriis, F Cartenì, P Parascandola, J Serpa… - Cell Cycle, 2018 - Taylor & Francis
The mechanisms behind the Warburg effect in mammalian cells, as well as for the similar
Crabtree effect in the yeast Saccharomyces cerevisiae, are still a matter of debate: why do …

Cellular adaptation takes advantage of atavistic regression programs during carcinogenesis

D Gnocchi, D Nikolic, RR Paparella, C Sabbà… - Cancers, 2023 - mdpi.com
Simple Summary Cancer can be considered the epidemic of the third millennium, and recent
projections paint a worrying scenario for the coming decades. Knowledge about the causes …

An enzyme‐coated metal–organic framework shell for synthetically adaptive cell survival

K Liang, JJ Richardson, CJ Doonan… - Angewandte Chemie …, 2017 - Wiley Online Library
A bioactive synthetic porous shell was engineered to enable cells to survive in an
oligotrophic environment. Eukaryotic cells (yeast) were firstly coated with a β‐galactosidase …

Ultrahigh performance liquid chromatography− tandem mass spectrometry method for fast and robust quantification of anionic and aromatic metabolites

JM Buescher, S Moco, U Sauer, N Zamboni - Analytical chemistry, 2010 - ACS Publications
Quantification of metabolites is of pivotal relevance in biology, where it complements more
established omics techniques such as transcriptomics and proteomics. Here, we present a …

Transcriptional regulation is insufficient to explain substrate‐induced flux changes in Bacillus subtilis

V Chubukov, M Uhr, L Le Chat, RJ Kleijn… - Molecular systems …, 2013 - embopress.org
One of the key ways in which microbes are thought to regulate their metabolism is by
modulating the availability of enzymes through transcriptional regulation. However, the …

Proteomic and physiological analyses of wheat seeds exposed to copper and iron nanoparticles

F Yasmeen, NI Raja, A Razzaq, S Komatsu - Biochimica et Biophysica Acta …, 2017 - Elsevier
To elucidate the role of Cu and Fe NPs on the yield of wheat varieties, a gel-free proteomic
technique was used. NPs were synthesized and characterized through zeta potential, EDX …

Metabolic effects of influenza virus infection in cultured animal cells: Intra-and extracellular metabolite profiling

JB Ritter, AS Wahl, S Freund, Y Genzel, U Reichl - BMC systems biology, 2010 - Springer
Background Many details in cell culture-derived influenza vaccine production are still poorly
understood and approaches for process optimization mainly remain empirical. More insights …

Full humanization of the glycolytic pathway in Saccharomyces cerevisiae

FJ Boonekamp, E Knibbe, MA Vieira-Lara, M Wijsman… - Cell Reports, 2022 - cell.com
Although transplantation of single genes in yeast plays a key role in elucidating gene
functionality in metazoans, technical challenges hamper humanization of full pathways and …

Yeast increases glycolytic flux to support higher growth rates accompanied by decreased metabolite regulation and lower protein phosphorylation

M Chen, T **e, H Li, Y Zhuang… - Proceedings of the …, 2023 - National Acad Sciences
Supply of Gibbs free energy and precursors are vital for cellular function and cell metabolism
have evolved to be tightly regulated to balance their supply and consumption. Precursors …

Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity

SM Fendt, JM Buescher, F Rudroff, P Picotti… - Molecular systems …, 2010 - embopress.org
What is the relationship between enzymes and metabolites, the two major constituents of
metabolic networks? We propose three alternative relationships between enzyme capacity …