Computational analysis of cancer genome sequencing data

I Cortés-Ciriano, DC Gulhan, JJK Lee… - Nature Reviews …, 2022‏ - nature.com
Distilling biologically meaningful information from cancer genome sequencing data requires
comprehensive identification of somatic alterations using rigorous computational methods …

Chromothripsis in cancer cells: An update

A Rode, KK Maass, KV Willmund… - … journal of cancer, 2016‏ - Wiley Online Library
In 2011, a novel form of genome instability was reported by Stephens et al., characterized by
tens to hundreds of locally clustered rearrangements affecting one or a few chromosome (s) …

Molecular landmarks of tumor hypoxia across cancer types

V Bhandari, C Hoey, LY Liu, E Lalonde, J Ray… - Nature …, 2019‏ - nature.com
Many primary-tumor subregions have low levels of molecular oxygen, termed hypoxia.
Hypoxic tumors are at elevated risk for local failure and distant metastasis, but the molecular …

Lung neuroendocrine tumours: deep sequencing of the four World Health Organization histotypes reveals chromatin‐remodelling genes as major players and a …

M Simbolo, A Mafficini, KO Sikora… - The Journal of …, 2017‏ - Wiley Online Library
Next‐generation sequencing (NGS) was applied to 148 lung neuroendocrine tumours
(LNETs) comprising the four World Health Organization classification categories: 53 typical …