GENCODE: the reference human genome annotation for The ENCODE Project
The GENCODE Consortium aims to identify all gene features in the human genome using a
combination of computational analysis, manual annotation, and experimental validation …
combination of computational analysis, manual annotation, and experimental validation …
The Pfam protein families database
M Punta, PC Coggill, RY Eberhardt, J Mistry… - Nucleic acids …, 2012 - academic.oup.com
Pfam is a widely used database of protein families, currently containing more than 13 000
manually curated protein families as of release 26.0. Pfam is available via servers in the UK …
manually curated protein families as of release 26.0. Pfam is available via servers in the UK …
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families
I Kalvari, J Argasinska, N Quinones-Olvera… - Nucleic acids …, 2018 - academic.oup.com
The Rfam database is a collection of RNA families in which each family is represented by a
multiple sequence alignment, a consensus secondary structure, and a covariance model. In …
multiple sequence alignment, a consensus secondary structure, and a covariance model. In …
Recent trends in RNA informatics: a review of machine learning and deep learning for RNA secondary structure prediction and RNA drug discovery
Computational analysis of RNA sequences constitutes a crucial step in the field of RNA
biology. As in other domains of the life sciences, the incorporation of artificial intelligence …
biology. As in other domains of the life sciences, the incorporation of artificial intelligence …
RNA secondary structure prediction using deep learning with thermodynamic integration
Accurate predictions of RNA secondary structures can help uncover the roles of functional
non-coding RNAs. Although machine learning-based models have achieved high …
non-coding RNAs. Although machine learning-based models have achieved high …
Rfam 12.0: updates to the RNA families database
The Rfam database (available at http://rfam. xfam. org) is a collection of non-coding RNA
families represented by manually curated sequence alignments, consensus secondary …
families represented by manually curated sequence alignments, consensus secondary …
MODOMICS: a database of RNA modification pathways—2013 update
MODOMICS is a database of RNA modifications that provides comprehensive information
concerning the chemical structures of modified ribonucleosides, their biosynthetic pathways …
concerning the chemical structures of modified ribonucleosides, their biosynthetic pathways …
RNA structure prediction: an overview of methods
MG Seetin, DH Mathews - Bacterial regulatory RNA: methods and …, 2012 - Springer
RNA is now appreciated to serve numerous cellular roles, and understanding RNA structure
is important for understanding a mechanism of action. This contribution discusses the …
is important for understanding a mechanism of action. This contribution discusses the …
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases
Nucleic acids research, 2021 - academic.oup.com
RNAcentral is a comprehensive database of non-coding RNA (ncRNA) sequences that
provides a single access point to 44 RNA resources and> 18 million ncRNA sequences from …
provides a single access point to 44 RNA resources and> 18 million ncRNA sequences from …
The genome of Eucalyptus grandis
Eucalypts are the world's most widely planted hardwood trees. Their outstanding diversity,
adaptability and growth have made them a global renewable resource of fibre and energy …
adaptability and growth have made them a global renewable resource of fibre and energy …