Graph neural networks for materials science and chemistry

P Reiser, M Neubert, A Eberhard, L Torresi… - Communications …, 2022‏ - nature.com
Abstract Machine learning plays an increasingly important role in many areas of chemistry
and materials science, being used to predict materials properties, accelerate simulations …

Designing microbial cell factories for the production of chemicals

JS Cho, GB Kim, H Eun, CW Moon, SY Lee - Jacs Au, 2022‏ - ACS Publications
The sustainable production of chemicals from renewable, nonedible biomass has emerged
as an essential alternative to address pressing environmental issues arising from our heavy …

Graph neural networks for natural language processing: A survey

L Wu, Y Chen, K Shen, X Guo, H Gao… - … and Trends® in …, 2023‏ - nowpublishers.com
Deep learning has become the dominant approach in addressing various tasks in Natural
Language Processing (NLP). Although text inputs are typically represented as a sequence …

Artificial intelligence for retrosynthetic planning needs both data and expert knowledge

F Strieth-Kalthoff, S Szymkuc, K Molga… - Journal of the …, 2024‏ - ACS Publications
Rapid advancements in artificial intelligence (AI) have enabled breakthroughs across many
scientific disciplines. In organic chemistry, the challenge of planning complex multistep …

State-of-the-art augmented NLP transformer models for direct and single-step retrosynthesis

IV Tetko, P Karpov, R Van Deursen, G Godin - Nature communications, 2020‏ - nature.com
We investigated the effect of different training scenarios on predicting the (retro) synthesis of
chemical compounds using text-like representation of chemical reactions (SMILES) and …

Machine intelligence for chemical reaction space

P Schwaller, AC Vaucher, R Laplaza… - Wiley …, 2022‏ - Wiley Online Library
Discovering new reactions, optimizing their performance, and extending the synthetically
accessible chemical space are critical drivers for major technological advances and more …

Self-supervised graph-level representation learning with local and global structure

M Xu, H Wang, B Ni, H Guo… - … conference on machine …, 2021‏ - proceedings.mlr.press
This paper studies unsupervised/self-supervised whole-graph representation learning,
which is critical in many tasks such as molecule properties prediction in drug and material …

Deep retrosynthetic reaction prediction using local reactivity and global attention

S Chen, Y Jung - JACS Au, 2021‏ - ACS Publications
As a fundamental problem in chemistry, retrosynthesis aims at designing reaction pathways
and intermediates for a target compound. The goal of artificial intelligence (AI)-aided …

Local augmentation for graph neural networks

S Liu, R Ying, H Dong, L Li, T Xu… - International …, 2022‏ - proceedings.mlr.press
Abstract Graph Neural Networks (GNNs) have achieved remarkable performance on graph-
based tasks. The key idea for GNNs is to obtain informative representation through …

AiZynthFinder: a fast, robust and flexible open-source software for retrosynthetic planning

S Genheden, A Thakkar, V Chadimová… - Journal of …, 2020‏ - Springer
We present the open-source AiZynthFinder software that can be readily used in
retrosynthetic planning. The algorithm is based on a Monte Carlo tree search that recursively …