Contamination in low microbial biomass microbiome studies: issues and recommendations

R Eisenhofer, JJ Minich, C Marotz, A Cooper… - Trends in …, 2019 - cell.com
Next-generation sequencing approaches in microbiome research have allowed surveys of
microbial communities, their genomes, and their functions with higher sensitivity than ever …

Insights into the coral microbiome: underpinning the health and resilience of reef ecosystems

DG Bourne, KM Morrow… - Annual review of …, 2016 - annualreviews.org
Corals are fundamental ecosystem engineers, creating large, intricate reefs that support
diverse and abundant marine life. At the core of a healthy coral animal is a dynamic …

Lytic to temperate switching of viral communities

B Knowles, CB Silveira, BA Bailey, K Barott, VA Cantu… - Nature, 2016 - nature.com
Microbial viruses can control host abundances via density-dependent lytic predator–prey
dynamics. Less clear is how temperate viruses, which coexist and replicate with their host …

The microbiome of coral surface mucus has a key role in mediating holobiont health and survival upon disturbance

B Glasl, GJ Herndl, PR Frade - The ISME journal, 2016 - academic.oup.com
Microbes are well-recognized members of the coral holobiont. However, little is known about
the short-term dynamics of mucus-associated microbial communities under natural …

Rapid ecosystem-scale consequences of acute deoxygenation on a Caribbean coral reef

MD Johnson, JJ Scott, M Leray, N Lucey… - Nature …, 2021 - nature.com
Loss of oxygen in the global ocean is accelerating due to climate change and
eutrophication, but how acute deoxygenation events affect tropical marine ecosystems …

A global atlas of marine antibiotic resistance genes and their expression

N Xu, D Qiu, Z Zhang, Y Wang, B Chen, Q Zhang… - Water Research, 2023 - Elsevier
Oceans serve as global reservoirs of antibiotic-resistant bacteria and antibiotic resistance
genes (ARGs). However, little is known about the traits and expression of ARGs in response …

Microbial indicators of environmental perturbations in coral reef ecosystems

B Glasl, DG Bourne, PR Frade, T Thomas, B Schaffelke… - Microbiome, 2019 - Springer
Background Coral reefs are facing unprecedented pressure on local and global scales.
Sensitive and rapid markers for ecosystem stress are urgently needed to underpin effective …

The vulnerability and resilience of reef-building corals

HM Putnam, KL Barott, TD Ainsworth, RD Gates - Current Biology, 2017 - cell.com
Reef-building corals provide the foundation for the structural and biological diversity of coral-
reef ecosystems. These massive biological structures, which can be seen from space, are …

Microbial interactions with dissolved organic matter are central to coral reef ecosystem function and resilience

CE Nelson, L Wegley Kelly… - Annual Review of Marine …, 2023 - annualreviews.org
To thrive in nutrient-poor waters, coral reefs must retain and recycle materials efficiently. This
review centers microbial processes in facilitating the persistence and stability of coral reefs …

Global microbialization of coral reefs

AF Haas, MFM Fairoz, LW Kelly, CE Nelson… - Nature …, 2016 - nature.com
Microbialization refers to the observed shift in ecosystem trophic structure towards higher
microbial biomass and energy use. On coral reefs, the proximal causes of microbialization …