Performance and application of 16S rRNA gene cycle sequencing for routine identification of bacteria in the clinical microbiology laboratory
DL Church, L Cerutti, A Gürtler, T Griener… - Clinical microbiology …, 2020 - Am Soc Microbiol
This review provides a state-of-the-art description of the performance of Sanger cycle
sequencing of the 16S rRNA gene for routine identification of bacteria in the clinical …
sequencing of the 16S rRNA gene for routine identification of bacteria in the clinical …
Bacterial endophyte colonization and distribution within plants
The plant endosphere contains a diverse group of microbial communities. There is general
consensus that these microbial communities make significant contributions to plant health …
consensus that these microbial communities make significant contributions to plant health …
Global diversity and biogeography of bacterial communities in wastewater treatment plants
Microorganisms in wastewater treatment plants (WWTPs) are essential for water purification
to protect public and environmental health. However, the diversity of microorganisms and …
to protect public and environmental health. However, the diversity of microorganisms and …
Enhancing diversity analysis by repeatedly rarefying next generation sequencing data describing microbial communities
Amplicon sequencing has revolutionized our ability to study DNA collected from
environmental samples by providing a rapid and sensitive technique for microbial …
environmental samples by providing a rapid and sensitive technique for microbial …
A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites
The human gut microbiota produces dozens of metabolites that accumulate in the
bloodstream,, where they can have systemic effects on the host. Although these small …
bloodstream,, where they can have systemic effects on the host. Although these small …
Metagenomic approaches in microbial ecology: an update on whole-genome and marker gene sequencing analyses
AE Pérez-Cobas, L Gomez-Valero… - Microbial …, 2020 - microbiologyresearch.org
Metagenomics and marker gene approaches, coupled with high-throughput sequencing
technologies, have revolutionized the field of microbial ecology. Metagenomics is a culture …
technologies, have revolutionized the field of microbial ecology. Metagenomics is a culture …
Phylogenies of the 16S rRNA gene and its hypervariable regions lack concordance with core genome phylogenies
HB Hassler, B Probert, C Moore, E Lawson… - Microbiome, 2022 - Springer
Abstract Background The 16S rRNA gene is used extensively in bacterial phylogenetics, in
species delineation, and now widely in microbiome studies. However, the gene suffers from …
species delineation, and now widely in microbiome studies. However, the gene suffers from …
Structure and function of the bacterial root microbiota in wild and domesticated barley
The microbial communities inhabiting the root interior of healthy plants, as well as the
rhizosphere, which consists of soil particles firmly attached to roots, engage in symbiotic …
rhizosphere, which consists of soil particles firmly attached to roots, engage in symbiotic …
Insights from 20 years of bacterial genome sequencing
Since the first two complete bacterial genome sequences were published in 1995, the
science of bacteria has dramatically changed. Using third-generation DNA sequencing, it is …
science of bacteria has dramatically changed. Using third-generation DNA sequencing, it is …
Oscillospira and related bacteria – From metagenomic species to metabolic features
U Gophna, T Konikoff… - Environmental …, 2017 - Wiley Online Library
Oscillospira is an under‐studied anaerobic bacterial genus from Clostridial cluster IV that
has resisted cultivation for over a century since the first time it was observed. In recent years …
has resisted cultivation for over a century since the first time it was observed. In recent years …