[HTML][HTML] RNA structural dynamics as captured by molecular simulations: a comprehensive overview

J Šponer, G Bussi, M Krepl, P Banáš… - Chemical …, 2018 - pmc.ncbi.nlm.nih.gov
With both catalytic and genetic functions, ribonucleic acid (RNA) is perhaps the most
pluripotent chemical species in molecular biology, and its functions are intimately linked to …

From Levinthal to pathways to funnels

KA Dill, HS Chan - Nature structural biology, 1997 - nature.com
From Levinthal to pathways to funnels Page 1 © 1997 Nature Publishing Group http://www.nature.com/nsmb
perspective From Levinthal to pathways to funnels Ken A. Dill and Hue Sun Chan A new …

RNA structural dynamics as captured by molecular simulations: a comprehensive overview

J Sponer, G Bussi, M Krepl, P Banáš, S Bottaro… - Chemical …, 2018 - ACS Publications
With both catalytic and genetic functions, ribonucleic acid (RNA) is perhaps the most
pluripotent chemical species in molecular biology, and its functions are intimately linked to …

Protein folding: a perspective from theory and experiment

CM Dobson, A Šali, M Karplus - … Chemie International Edition, 1998 - Wiley Online Library
The mechanism of protein folding (represented schematically below) is one of the most
fascinating problems in the field of chemical reactions. This review presents the progess …

Heterogeneity in protein folding and unfolding reactions

S Bhatia, JB Udgaonkar - Chemical Reviews, 2022 - ACS Publications
Proteins have dynamic structures that undergo chain motions on time scales spanning from
picoseconds to seconds. Resolving the resultant conformational heterogeneity is essential …

The complex folding network of single calmodulin molecules

J Stigler, F Ziegler, A Gieseke, JCM Gebhardt, M Rief - Science, 2011 - science.org
Direct observation of the detailed conformational fluctuations of a single protein molecule en
route to its folded state has so far been realized only in silico. We have used single-molecule …

Nucleation mechanisms in protein folding

AR Fersht - Current opinion in structural biology, 1997 - Elsevier
Experiment and theory are converging on the importance of nucleation mechanisms in
protein folding. These mechanisms do not use classic nuclei, which are well formed …

Diffusive dynamics of the reaction coordinate for protein folding funnels

ND Socci, JN Onuchic, PG Wolynes - The Journal of chemical physics, 1996 - pubs.aip.org
The quantitative description of model protein folding kinetics using a diffusive collective
reaction coordinate is examined. Direct folding kinetics, diffusional coefficients and free …

FROM FOLDING THEORIES TO FOLDING PROTEINS: A Review and Assessment of Simulation Studies of Protein Folding and Unfolding

JE Shea, CL Brooks III - Annual review of physical chemistry, 2001 - annualreviews.org
▪ Abstract Beginning with simplified lattice and continuum “minimalist” models and
progressing to detailed atomic models, simulation studies have augmented and directed …

Role of the molten globule state in protein folding

M Arai, K Kuwajima - Advances in protein chemistry, 2000 - Elsevier
Publisher Summary This chapter deals with the structure of the molten globules of various
globular proteins revealed by the recent experimental studies. Recent advances in …