Nutritional control of growth and development in yeast

JR Broach - Genetics, 2012 - academic.oup.com
Availability of key nutrients, such as sugars, amino acids, and nitrogen compounds, dictates
the developmental programs and the growth rates of yeast cells. A number of overlap** …

The ULK1 complex: sensing nutrient signals for autophagy activation

PM Wong, C Puente, IG Ganley, X Jiang - Autophagy, 2013 - Taylor & Francis
The Atg1/ULK1 complex plays a central role in starvation-induced autophagy, integrating
signals from upstream sensors such as MTOR and AMPK and transducing them to the …

An atlas of substrate specificities for the human serine/threonine kinome

JL Johnson, TM Yaron, EM Huntsman, A Kerelsky… - Nature, 2023 - nature.com
Protein phosphorylation is one of the most widespread post-translational modifications in
biology,. With advances in mass-spectrometry-based phosphoproteomics, 90,000 sites of …

The mTOR-regulated phosphoproteome reveals a mechanism of mTORC1-mediated inhibition of growth factor signaling

PP Hsu, SA Kang, J Rameseder, Y Zhang, KA Ottina… - science, 2011 - science.org
The mammalian target of rapamycin (mTOR) protein kinase is a master growth promoter that
nucleates two complexes, mTORC1 and mTORC2. Despite the diverse processes controlled …

[HTML][HTML] Condensed-phase signaling can expand kinase specificity and respond to macromolecular crowding

D Sang, T Shu, CF Pantoja, AI de Opakua… - Molecular cell, 2022 - cell.com
Phase separation can concentrate biomolecules and accelerate reactions. However, the
mechanisms and principles connecting this mesoscale organization to signaling dynamics …

High-throughput phosphoproteomics reveals in vivo insulin signaling dynamics

SJ Humphrey, SB Azimifar, M Mann - Nature biotechnology, 2015 - nature.com
Mass spectrometry has enabled the study of cellular signaling on a systems-wide scale,
through the quantification of post-translational modifications, such as protein …

Physicochemical properties of cells and their effects on intrinsically disordered proteins (IDPs)

FX Theillet, A Binolfi, T Frembgen-Kesner… - Chemical …, 2014 - ACS Publications
It has long been axiomatic that a protein's structure determines its function. Intrinsically
disordered proteins (IDPs) and disordered protein regions (IDRs) defy this structure …

mTORC1 phosphorylation sites encode their sensitivity to starvation and rapamycin

SA Kang, ME Pacold, CL Cervantes, D Lim, HJ Lou… - Science, 2013 - science.org
Introduction The mechanistic target of rapamycin (mTOR) complex 1 (mTORC1) protein
kinase promotes cell growth by controlling major anabolic and catabolic processes in …

A single kinase generates the majority of the secreted phosphoproteome

VS Tagliabracci, SE Wiley, X Guo, LN Kinch, E Durrant… - Cell, 2015 - cell.com
The existence of extracellular phosphoproteins has been acknowledged for over a century.
However, research in this area has been undeveloped largely because the kinases that …

Evolution and functional cross‐talk of protein post‐translational modifications

P Beltrao, P Bork, NJ Krogan… - Molecular systems …, 2013 - embopress.org
Protein post‐translational modifications (PTM s) allow the cell to regulate protein activity and
play a crucial role in the response to changes in external conditions or internal states …