Stochastic community assembly: does it matter in microbial ecology?

J Zhou, D Ning - Microbiology and molecular biology reviews, 2017 - Am Soc Microbiol
Understanding the mechanisms controlling community diversity, functions, succession, and
biogeography is a central, but poorly understood, topic in ecology, particularly in microbial …

[HTML][HTML] Nestedness in complex networks: observation, emergence, and implications

MS Mariani, ZM Ren, J Bascompte, CJ Tessone - Physics Reports, 2019 - Elsevier
The observed architecture of ecological and socio-economic networks differssignificantly
from that of random networks. From a network science standpoint, non-random structural …

[KSIĄŻKA][B] Randomization, bootstrap and Monte Carlo methods in biology

BFJ Manly - 2018 - taylorfrancis.com
Modern computer-intensive statistical methods play a key role in solving many problems
across a wide range of scientific disciplines. This new edition of the bestselling …

Structure and dynamics of core/periphery networks

P Csermely, A London, LY Wu… - Journal of Complex …, 2013 - academic.oup.com
Recent studies uncovered important core/periphery network structures characterizing
complex sets of cooperative and competitive interactions between network nodes, be they …

The trouble with stress: A flexible method for the evaluation of nonmetric multidimensional scaling

E Dexter, G Rollwagen‐Bollens… - Limnology and …, 2018 - Wiley Online Library
Nonmetric multidimensional scaling (NMDS) is a powerful statistical tool which enables
complex multivariate data sets to be visualized in a reduced number of dimensions. Users …

Integrating the underlying structure of stochasticity into community ecology

LG Shoemaker, LL Sullivan, I Donohue, JS Cabral… - Ecology, 2020 - Wiley Online Library
Stochasticity is a core component of ecology, as it underlies key processes that structure and
create variability in nature. Despite its fundamental importance in ecological systems, the …

Disentangling biotic interactions, environmental filters, and dispersal limitation as drivers of species co‐occurrence

M D'Amen, HK Mod, NJ Gotelli, A Guisan - Ecography, 2018 - Wiley Online Library
A key focus in ecology is to search for community assembly rules. Here we compare two
community modelling frameworks that integrate a combination of environmental and spatial …

Butterfly community shifts over two centuries

JC Habel, A Segerer, W Ulrich, O Torchyk… - Conservation …, 2016 - Wiley Online Library
Environmental changes strongly impact the distribution of species and subsequently the
composition of species assemblages. Although most community ecology studies represent …

Dos and don'ts when inferring assembly rules from diversity patterns

T Münkemüller, L Gallien, LJ Pollock… - Global Ecology and …, 2020 - Wiley Online Library
Aim More than ever, ecologists seek to understand how species are distributed and have
assembled into communities using the “filtering framework”. This framework is based on the …

The ghost of nestedness in ecological networks

P Staniczenko, JC Kopp, S Allesina - Nature communications, 2013 - nature.com
Ecologists are fascinated by the prevalence of nestedness in biogeographic and community
data, where it is thought to promote biodiversity in mutualistic systems. Traditionally …