Going further than Lipinski's rule in drug design

WP Walters - Expert opinion on drug discovery, 2012 - Taylor & Francis
Introduction: Lipinski's 1997 publication of the 'Rule of 5'(Ro5) was one of the most
influential recent medicinal chemistry publications. In the almost 15 years since the …

Molecular similarity and diversity in chemoinformatics: from theory to applications

AG Maldonado, JP Doucet, M Petitjean, BT Fan - Molecular diversity, 2006 - Springer
This review is dedicated to a survey on molecular similarity and diversity. Key findings
reported in recent investigations are selectively highlighted and summarized. Even if this …

New methodologies for ligand-based virtual screening

FL Stahura, J Bajorath - Current pharmaceutical design, 2005 - ingentaconnect.com
Computational screening of compound databases has become increasingly popular in
pharmaceutical research. Virtual screening approaches can roughly be divided into target …

De novo design: balancing novelty and confined chemical space

PS Kutchukian, EI Shakhnovich - Expert opinion on drug discovery, 2010 - Taylor & Francis
Importance of the field: De novo drug design serves as a tool for the discovery of new
ligands for macromolecular targets as well as optimization of known ligands. Recently …

Ligand-based drug design methodologies in drug discovery process: an overview

M Bacilieri, S Moro - Current drug discovery technologies, 2006 - ingentaconnect.com
Ligand-Based Drug Design Methodologies in Drug Discovery Process: An Overview Page 1
Current Drug Discovery Technologies, 2006, 3, 155-165 155 1570-1638/06 $50.00+.00 © …

Prediction methods and databases within chemoinformatics: emphasis on drugs and drug candidates

SÓ Jónsdóttir, FS Jørgensen, S Brunak - Bioinformatics, 2005 - academic.oup.com
Motivation: To gather information about available databases and chemoinformatics methods
for prediction of properties relevant to the drug discovery and optimization process. Results …

FOG: Fragment Optimized Growth Algorithm for the de Novo Generation of Molecules Occupying Druglike Chemical Space

PS Kutchukian, D Lou… - Journal of chemical …, 2009 - ACS Publications
An essential feature of all practical de novo molecule generating programs is the ability to
focus the potential combinatorial explosion of grown molecules on a desired chemical …

Modern agrochemical research: a missed opportunity for drug discovery?

J Delaney, E Clarke, D Hughes, M Rice - Drug Discovery Today, 2006 - Elsevier
The word 'agrochemical'has often taken on a pejorative character in the public mind. Some
of the negative tone might have coloured the perception of the industry by pharma, together …

Computational chemistry-driven decision making in lead generation

V Schnecke, J Boström - Drug discovery today, 2006 - Elsevier
Novel starting points for drug discovery projects are generally found either by screening
large collections of compounds or smaller more-focused libraries. Ideally, hundreds or even …

Gradual in silico filtering for druglike substances

N Schneider, C Jäckels, C Andres… - Journal of chemical …, 2008 - ACS Publications
The suitability of decision trees in comparison to support vector machines for the
classification of chemical compounds into drugs and nondrugs was investigated. To account …