Improving few-and zero-shot reaction template prediction using modern hopfield networks
Finding synthesis routes for molecules of interest is essential in the discovery of new drugs
and materials. To find such routes, computer-assisted synthesis planning (CASP) methods …
and materials. To find such routes, computer-assisted synthesis planning (CASP) methods …
Adaptive immune receptor repertoire analysis
B cell and T cell receptor repertoires compose the adaptive immune receptor repertoire
(AIRR) of an individual. The AIRR is a unique collection of antigen-specific receptors that …
(AIRR) of an individual. The AIRR is a unique collection of antigen-specific receptors that …
Hopfield networks is all you need
We introduce a modern Hopfield network with continuous states and a corresponding
update rule. The new Hopfield network can store exponentially (with the dimension of the …
update rule. The new Hopfield network can store exponentially (with the dimension of the …
DeepTCR is a deep learning framework for revealing sequence concepts within T-cell repertoires
Deep learning algorithms have been utilized to achieve enhanced performance in pattern-
recognition tasks. The ability to learn complex patterns in data has tremendous implications …
recognition tasks. The ability to learn complex patterns in data has tremendous implications …
Cloob: Modern hopfield networks with infoloob outperform clip
CLIP yielded impressive results on zero-shot transfer learning tasks and is considered as a
foundation model like BERT or GPT3. CLIP vision models that have a rich representation are …
foundation model like BERT or GPT3. CLIP vision models that have a rich representation are …
In silico proof of principle of machine learning-based antibody design at unconstrained scale
Generative machine learning (ML) has been postulated to become a major driver in the
computational design of antigen-specific monoclonal antibodies (mAb). However, efforts to …
computational design of antigen-specific monoclonal antibodies (mAb). However, efforts to …
Large associative memory problem in neurobiology and machine learning
Dense Associative Memories or modern Hopfield networks permit storage and reliable
retrieval of an exponentially large (in the dimension of feature space) number of memories …
retrieval of an exponentially large (in the dimension of feature space) number of memories …
On sparse modern hopfield model
We introduce the sparse modern Hopfield model as a sparse extension of the modern
Hopfield model. Like its dense counterpart, the sparse modern Hopfield model equips a …
Hopfield model. Like its dense counterpart, the sparse modern Hopfield model equips a …
[HTML][HTML] CLEVR-XAI: A benchmark dataset for the ground truth evaluation of neural network explanations
The rise of deep learning in today's applications entailed an increasing need in explaining
the model's decisions beyond prediction performances in order to foster trust and …
the model's decisions beyond prediction performances in order to foster trust and …
Conformal prediction for time series with modern hopfield networks
To quantify uncertainty, conformal prediction methods are gaining continuously more
interest and have already been successfully applied to various domains. However, they are …
interest and have already been successfully applied to various domains. However, they are …