[HTML][HTML] Single cell cancer epigenetics

M Casado-Pelaez, A Bueno-Costa, M Esteller - Trends in Cancer, 2022 - cell.com
Bulk sequencing methodologies have allowed us to make great progress in cancer
research. Unfortunately, these techniques lack the resolution to fully unravel the epigenetic …

[HTML][HTML] Regulatory SNPs: altered transcription factor binding sites implicated in complex traits and diseases

AO Degtyareva, EV Antontseva… - International journal of …, 2021 - mdpi.com
The vast majority of the genetic variants (mainly SNPs) associated with various human traits
and diseases map to a noncoding part of the genome and are enriched in its regulatory …

KAS-ATAC reveals the genome-wide single-stranded accessible chromatin landscape of the human genome

SH Kim, GK Marinov, WJ Greenleaf - Genome Research, 2025 - genome.cshlp.org
Gene regulation in most eukaryotes involves two fundamental processes: alterations in
genome packaging by nucleosomes, with active cis-regulatory elements (CREs) generally …

Genome-wide distribution of 5-hydroxymethyluracil and chromatin accessibility in the Breviolum minutum genome

GK Marinov, X Chen, MP Swaffer, T **
GK Marinov, SH Kim, ST Bagdatli, SI Higashino… - Genome Biology, 2023 - Springer
Detecting and mitigating off-target activity is critical to the practical application of CRISPR-
mediated genome and epigenome editing. While numerous methods have been developed …

Integrated analysis of ATAC-seq and RNA-seq reveals the transcriptional regulation network in SLE

J Wu, Y Li, D Feng, Y Yu, H Long, Z Hu, Q Lu… - International …, 2023 - Elsevier
Background CD4+ T cells have a vital role in the pathogenesis of systemic lupus
erythematosus (SLE), abnormal gene expression in CD4+ T cells partly accounting for …

The chromatin landscape of the histone-possessing Bacteriovorax bacteria

GK Marinov, B Doughty, A Kundaje… - Genome …, 2025 - genome.cshlp.org
Histone proteins have traditionally been thought to be restricted to eukaryotes and most
archaea, with eukaryotic nucleosomal histones deriving from their archaeal ancestors. In …

Differential regulation of male-hormones-related enhancers revealed by chromatin accessibility and transcriptional profiles in pig liver

S Chan, Y Wang, Y Luo, M Zheng, F **e, M Xue… - Biomolecules, 2024 - mdpi.com
Surgical castration can effectively avoid boar taint and improve pork quality by removing the
synthesis of androstenone in the testis, thereby reducing its deposition in adipose tissue …

Human-genome single nucleotide polymorphisms affecting transcription factor binding and their role in pathogenesis

EV Antontseva, AO Degtyareva… - Vavilov Journal of …, 2023 - pmc.ncbi.nlm.nih.gov
Single nucleotide polymorphisms (SNPs) are the most common type of variation in the
human genome. The vast majority of SNPs identified in the human genome do not have any …

The chromatin landscape of the euryarchaeon Haloferax volcanii

GK Marinov, ST Bagdatli, T Wu, C He, A Kundaje… - Genome Biology, 2023 - Springer
Abstract Background Archaea, together with Bacteria, represent the two main divisions of life
on Earth, with many of the defining characteristics of the more complex eukaryotes tracing …