Emerging technologies revolutionise insect ecology and monitoring

R Van Klink, T August, Y Bas, P Bodesheim… - Trends in ecology & …, 2022 - cell.com
Insects are the most diverse group of animals on Earth, but their small size and high diversity
have always made them challenging to study. Recent technological advances have the …

Opportunities and challenges of macrogenetic studies

DM Leigh, CB van Rees, KL Millette, MF Breed… - Nature Reviews …, 2021 - nature.com
The rapidly emerging field of macrogenetics focuses on analysing publicly accessible
genetic datasets from thousands of species to explore large-scale patterns and predictors of …

Environmental DNA (eDNA) metabarcoding reveals strong discrimination among diverse marine habitats connected by water movement

GJ Jeunen, M Knapp, HG Spencer… - Molecular Ecology …, 2019 - Wiley Online Library
While in recent years environmental DNA (eDNA) metabarcoding surveys have shown great
promise as an alternative monitoring method, the integration into existing marine monitoring …

Validation of COI metabarcoding primers for terrestrial arthropods

V Elbrecht, TWA Braukmann, NV Ivanova, SWJ Prosser… - PeerJ, 2019 - peerj.com
Metabarcoding can rapidly determine the species composition of bulk samples and thus
aids biodiversity and ecosystem assessment. However, it is essential to use primer sets that …

Molecular ecology meets systematic conservation planning

ES Nielsen, JO Hanson, SB Carvalho, M Beger… - Trends in Ecology & …, 2023 - cell.com
Integrative and proactive conservation approaches are critical to the long-term persistence
of biodiversity. Molecular data can provide important information on evolutionary processes …

A practical guide to DNA metabarcoding for entomological ecologists

M Liu, LJ Clarke, SC Baker, GJ Jordan… - Ecological …, 2020 - Wiley Online Library
1. DNA metabarcoding is a cost‐effective species identification approach with great potential
to assist entomological ecologists. This review presents a practical guide to help …

Beyond biodiversity: Can environmental DNA (eDNA) cut it as a population genetics tool?

CIM Adams, M Knapp, NJ Gemmell, GJ Jeunen… - Genes, 2019 - mdpi.com
Population genetic data underpin many studies of behavioral, ecological, and evolutionary
processes in wild populations and contribute to effective conservation management …

Why the COI barcode should be the community DNA metabarcode for the metazoa

C Andújar, P Arribas, DW Yu, AP Vogler, BC Emerson - 2018 - Wiley Online Library
Metabarcoding of complex metazoan communities is increasingly being used to measure
biodiversity in terrestrial, freshwater and marine ecosystems, revolutionizing our ability to …

Metabarcoding a diverse arthropod mock community

TWA Braukmann, NV Ivanova… - Molecular ecology …, 2019 - Wiley Online Library
Although DNA metabarcoding is an attractive approach for monitoring biodiversity, it is often
difficult to detect all the species present in a bulk sample. In particular, sequence recovery …

To denoise or to cluster, that is not the question: optimizing pipelines for COI metabarcoding and metaphylogeography

A Antich, C Palacin, OS Wangensteen, X Turon - BMC bioinformatics, 2021 - Springer
Background The recent blooming of metabarcoding applications to biodiversity studies
comes with some relevant methodological debates. One such issue concerns the treatment …