LASP: Fast global potential energy surface exploration

SD Huang, C Shang, PL Kang… - Wiley Interdisciplinary …, 2019 - Wiley Online Library
Here we introduce the LASP code, which is designed for large‐scale atomistic simulation of
complex materials with neural network (NN) potential. The software architecture and …

Exploring energy landscapes

DJ Wales - Annual review of physical chemistry, 2018 - annualreviews.org
Recent advances in the potential energy landscapes approach are highlighted, including
both theoretical and computational contributions. Treating the high dimensionality of …

Automated discovery and refinement of reactive molecular dynamics pathways

LP Wang, RT McGibbon, VS Pande… - Journal of chemical …, 2016 - ACS Publications
We describe a flexible and broadly applicable energy refinement method,“nebterpolation,”
for identifying and characterizing the reaction events in a molecular dynamics (MD) …

Energy landscapes for machine learning

AJ Ballard, R Das, S Martiniani, D Mehta… - Physical Chemistry …, 2017 - pubs.rsc.org
Machine learning techniques are being increasingly used as flexible non-linear fitting and
prediction tools in the physical sciences. Fitting functions that exhibit multiple solutions as …

Molecular energy landscapes of hardware-efficient ansatze in quantum computing

B Choy, DJ Wales - Journal of chemical theory and computation, 2023 - ACS Publications
Rapid advances in quantum computing have opened up new opportunities for solving the
central electronic structure problem in computational chemistry. In the noisy intermediate …

Exploring biomolecular energy landscapes

JA Joseph, K Röder, D Chakraborty… - Chemical …, 2017 - pubs.rsc.org
The potential energy landscape perspective provides both a conceptual and a
computational framework for predicting, understanding and designing molecular properties …

Energy landscapes for proteins: From single funnels to multifunctional systems

K Röder, JA Joseph, BE Husic… - Advanced Theory and …, 2019 - Wiley Online Library
This report advances the hypothesis that multifunctional systems may be associated with
multifunnel potential and free energy landscapes, with particular focus on biomolecules. It …

Gaussian process regression for transition state search

A Denzel, J Kastner - Journal of chemical theory and computation, 2018 - ACS Publications
We implemented a gradient-based algorithm for transition state search which uses Gaussian
process regression. Besides a description of the algorithm, we provide a method to find the …

Exploring energy landscapes for solid-state systems with variable cells at the extended tight-binding level

P Pracht, JWR Morgan, DJ Wales - The Journal of Chemical Physics, 2023 - pubs.aip.org
The design of novel materials requires a theoretical understanding of dynamical processes
in the solid state, including polymorphic transitions and associated pathways. The …

Recent developments in computational modelling of nucleation in phase transformations

L Zhang, W Ren, A Samanta, Q Du - NPJ Computational Materials, 2016 - nature.com
Nucleation is one of the most common physical phenomena in physical, chemical, biological
and materials sciences. Owing to the complex multiscale nature of various nucleation events …