Ocean biogeochemical modelling

K Fennel, JP Mattern, SC Doney, L Bopp… - Nature Reviews …, 2022 - nature.com
Ocean biogeochemical models describe the ocean's circulation, physical properties,
biogeochemical properties and their transformations using coupled differential equations …

Global biogeochemical impacts of phytoplankton: a trait‐based perspective

E Litchman, P de Tezanos Pinto, KF Edwards… - Journal of …, 2015 - Wiley Online Library
Phytoplankton are key players in the global carbon cycle, contributing about half of global
primary productivity. Within the phytoplankton, functional groups (characterized by distinct …

Dedalus: A flexible framework for numerical simulations with spectral methods

KJ Burns, GM Vasil, JS Oishi, D Lecoanet… - Physical Review …, 2020 - APS
Numerical solutions of partial differential equations enable a broad range of scientific
research. The Dedalus project is a flexible, open-source, parallelized computational …

Mixotrophic protists and a new paradigm for marine ecology: where does plankton research go now?

KJ Flynn, A Mitra, K Anestis, AA Anschütz… - Journal of Plankton …, 2019 - academic.oup.com
Many protist plankton are mixotrophs, combining phototrophy and phagotrophy. Their role in
freshwater and marine ecology has emerged as a major develo** feature of plankton …

Foraging arena theory

RNM Ahrens, CJ Walters, V Christensen - Fish and fisheries, 2012 - Wiley Online Library
There is a critical need for quantitative models that can help evaluate trade‐off decisions
related to the impacts of harvesting and protection of aquatic ecosystems within an …

The stability analysis of the plankton full interaction model

TAS Al-Karkhi - AIP Conference Proceedings, 2023 - pubs.aip.org
To further investigate our understanding of biological processes in mathematical terms, we
study the full original model of prey and predator interactions studied previously by [1]. We …

Parameterization of mixed layer eddies. III: Implementation and impact in global ocean climate simulations

B Fox-Kemper, G Danabasoglu, R Ferrari, SM Griffies… - Ocean Modelling, 2011 - Elsevier
A parameterization for the restratification by finite-amplitude, submesoscale, mixed layer
eddies, formulated as an overturning streamfunction, has been recently proposed to …

Linking traits to species diversity and community structure in phytoplankton

E Litchman, P de Tezanos Pinto, CA Klausmeier… - Hydrobiologia, 2010 - Springer
In addition to answering Hutchinson's question “Why are there so many species?”, we need
to understand why certain species are found only under certain environmental conditions …

Biomass changes and trophic amplification of plankton in a warmer ocean

G Chust, JI Allen, L Bopp, C Schrum, J Holt… - Global Change …, 2014 - Wiley Online Library
Ocean warming can modify the ecophysiology and distribution of marine organisms, and
relationships between species, with nonlinear interactions between ecosystem components …

Evaluation of the current state of mechanistic aquatic biogeochemical modeling

GB Arhonditsis, MT Brett - Marine Ecology Progress Series, 2004 - int-res.com
The need for predictive process-oriented planktonic ecosystem models is widely recognized
by the aquatic science community. We conducted a meta-analysis of recent mechanistic …