DNA methylation cancer biomarkers: translation to the clinic

WJ Locke, D Guanzon, C Ma, YJ Liew… - Frontiers in …, 2019 - frontiersin.org
Carcinogenesis is accompanied by widespread DNA methylation changes within the cell.
These changes are characterized by a globally hypomethylated genome with focal …

MALDI-TOF mass spectrometry in clinical analysis and research

D Li, J Yi, G Han, L Qiao - ACS Measurement Science Au, 2022 - ACS Publications
In the decade after being awarded the Nobel Prize in Chemistry in 2002, matrix-assisted
laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) has been …

An atlas of active enhancers across human cell types and tissues

R Andersson, C Gebhard, I Miguel-Escalada, I Hoof… - Nature, 2014 - nature.com
Enhancers control the correct temporal and cell-type-specific activation of gene expression
in multicellular eukaryotes. Knowing their properties, regulatory activity and targets is crucial …

GADD45A binds R-loops and recruits TET1 to CpG island promoters

K Arab, E Karaulanov, M Musheev, P Trnka, A Schäfer… - Nature …, 2019 - nature.com
Abstract R-loops are DNA–RNA hybrids enriched at CpG islands (CGIs) that can regulate
chromatin states,,,,,,–. How R-loops are recognized and interpreted by specific epigenetic …

DNA methylation signatures link prenatal famine exposure to growth and metabolism

EW Tobi, JJ Goeman, R Monajemi, H Gu… - Nature …, 2014 - nature.com
Periconceptional diet may persistently influence DNA methylation levels with phenotypic
consequences. However, a comprehensive assessment of the characteristics of prenatal …

Tobacco smoking leads to extensive genome-wide changes in DNA methylation

S Zeilinger, B Kühnel, N Klopp, H Baurecht… - PloS one, 2013 - journals.plos.org
Environmental factors such as tobacco smoking may have long-lasting effects on DNA
methylation patterns, which might lead to changes in gene expression and in a broader …

Advances in MALDI mass spectrometry imaging single cell and tissues

X Zhu, T Xu, C Peng, S Wu - Frontiers in Chemistry, 2022 - frontiersin.org
Compared with conventional optical microscopy techniques, mass spectrometry imaging
(MSI) or imaging mass spectrometry (IMS) is a powerful, label-free analytical technique …

DNA methylation profiling in the clinic: applications and challenges

H Heyn, M Esteller - Nature Reviews Genetics, 2012 - nature.com
Abstract Knowledge of epigenetic alterations in disease is rapidly increasing owing to the
development of genome-wide techniques for their identification. The ever-growing number …

Principles and challenges of genome-wide DNA methylation analysis

PW Laird - Nature Reviews Genetics, 2010 - nature.com
Methylation of cytosine bases in DNA provides a layer of epigenetic control in many
eukaryotes that has important implications for normal biology and disease. Therefore …

Persistent epigenetic differences associated with prenatal exposure to famine in humans

BT Heijmans, EW Tobi, AD Stein… - Proceedings of the …, 2008 - National Acad Sciences
Extensive epidemiologic studies have suggested that adult disease risk is associated with
adverse environmental conditions early in development. Although the mechanisms behind …