Catalysis and Electron Transfer in De Novo Designed Metalloproteins
One of the hallmark advances in our understanding of metalloprotein function is showcased
in our ability to design new, non-native, catalytically active protein scaffolds. This review …
in our ability to design new, non-native, catalytically active protein scaffolds. This review …
Structural chemistry of peptides containing backbone expanded amino acid residues: conformational features of β, γ, and hybrid peptides
PG Vasudev, S Chatterjee, N Shamala… - Chemical …, 2011 - ACS Publications
The remarkable complexity of globular protein structures was first revealed about half a
century ago, when the crystal structure of myoglobin was determined at 2.4 Å. 1 In the …
century ago, when the crystal structure of myoglobin was determined at 2.4 Å. 1 In the …
Diversity of secondary structure in catalytic peptides with β-turn-biased sequences
X-ray crystallography has been applied to the structural analysis of a series of tetrapeptides
that were previously assessed for catalytic activity in an atroposelective bromination …
that were previously assessed for catalytic activity in an atroposelective bromination …
Structural basis for p38α MAP kinase quinazolinone and pyridol-pyrimidine inhibitor specificity
CE Fitzgerald, SB Patel, JW Becker… - Nature Structural & …, 2003 - nature.com
The quinazolinone and pyridol-pyrimidine classes of p38 MAP kinase inhibitors have a
previously unseen degree of specificity for p38 over other MAP kinases. Comparison of the …
previously unseen degree of specificity for p38 over other MAP kinases. Comparison of the …
How different are structurally flexible and rigid binding sites? Sequence and structural features discriminating proteins that do and do not undergo conformational …
Proteins are dynamic molecules and often undergo conformational change upon ligand
binding. It is widely accepted that flexible loop regions have a critical functional role in …
binding. It is widely accepted that flexible loop regions have a critical functional role in …
Exposing hidden alternative backbone conformations in X-ray crystallography using qFit
Proteins must move between different conformations of their native ensemble to perform
their functions. Crystal structures obtained from high-resolution X-ray diffraction data reflect …
their functions. Crystal structures obtained from high-resolution X-ray diffraction data reflect …
A conformational analysis of Walker motif A [GXXXXGKT (S)] in nucleotide-binding and other proteins
C Ramakrishnan, VS Dani, T Ramasarma - Protein engineering, 2002 - academic.oup.com
The sequence GXXXXGKT/S, popularly known as Walker motif A, is widely believed to be
the site for binding nucleotides in many proteins. Examination of the crystal structures in the …
the site for binding nucleotides in many proteins. Examination of the crystal structures in the …
Parameterization and Analysis of Peptide-Based Catalysts for the Atroposelective Bromination of 3-Arylquinazolin-4(3H)-ones
We report the development of a method to parameterize and predict the performance of
structurally flexible β-turn-containing peptide catalysts, using the atroposelective …
structurally flexible β-turn-containing peptide catalysts, using the atroposelective …
Gabapentin: a stereochemically constrained γ amino acid residue in hybrid peptide design
PG Vasudev, S Chatterjee, N Shamala… - Accounts of chemical …, 2009 - ACS Publications
Photographs courtesy of Prof. P. Balaram, Indian Institute of Science. Nature has used the all-
α-polypeptide backbone of proteins to create a remarkable diversity of folded structures …
α-polypeptide backbone of proteins to create a remarkable diversity of folded structures …
Hybrid peptide design. Hydrogen bonded conformations in peptides containing the stereochemically constrained γ-amino acid residue, gabapentin
PG Vasudev, K Ananda, S Chatterjee… - Journal of the …, 2007 - ACS Publications
The crystal structure of 12 peptides containing the conformationally constrained 1-
(aminomethyl) cyclohexaneacetic acid, gabapentin (Gpn), are reported. In all the 39 Gpn …
(aminomethyl) cyclohexaneacetic acid, gabapentin (Gpn), are reported. In all the 39 Gpn …