Catalysis and Electron Transfer in De Novo Designed Metalloproteins

KJ Koebke, TBJ Pinter, WC Pitts, VL Pecoraro - Chemical reviews, 2022 - ACS Publications
One of the hallmark advances in our understanding of metalloprotein function is showcased
in our ability to design new, non-native, catalytically active protein scaffolds. This review …

Structural chemistry of peptides containing backbone expanded amino acid residues: conformational features of β, γ, and hybrid peptides

PG Vasudev, S Chatterjee, N Shamala… - Chemical …, 2011 - ACS Publications
The remarkable complexity of globular protein structures was first revealed about half a
century ago, when the crystal structure of myoglobin was determined at 2.4 Å. 1 In the …

Diversity of secondary structure in catalytic peptides with β-turn-biased sequences

AJ Metrano, NC Abascal, BQ Mercado… - Journal of the …, 2017 - ACS Publications
X-ray crystallography has been applied to the structural analysis of a series of tetrapeptides
that were previously assessed for catalytic activity in an atroposelective bromination …

Structural basis for p38α MAP kinase quinazolinone and pyridol-pyrimidine inhibitor specificity

CE Fitzgerald, SB Patel, JW Becker… - Nature Structural & …, 2003 - nature.com
The quinazolinone and pyridol-pyrimidine classes of p38 MAP kinase inhibitors have a
previously unseen degree of specificity for p38 over other MAP kinases. Comparison of the …

How different are structurally flexible and rigid binding sites? Sequence and structural features discriminating proteins that do and do not undergo conformational …

K Gunasekaran, R Nussinov - Journal of molecular biology, 2007 - Elsevier
Proteins are dynamic molecules and often undergo conformational change upon ligand
binding. It is widely accepted that flexible loop regions have a critical functional role in …

Exposing hidden alternative backbone conformations in X-ray crystallography using qFit

DA Keedy, JS Fraser… - PLoS computational …, 2015 - journals.plos.org
Proteins must move between different conformations of their native ensemble to perform
their functions. Crystal structures obtained from high-resolution X-ray diffraction data reflect …

A conformational analysis of Walker motif A [GXXXXGKT (S)] in nucleotide-binding and other proteins

C Ramakrishnan, VS Dani, T Ramasarma - Protein engineering, 2002 - academic.oup.com
The sequence GXXXXGKT/S, popularly known as Walker motif A, is widely believed to be
the site for binding nucleotides in many proteins. Examination of the crystal structures in the …

Parameterization and Analysis of Peptide-Based Catalysts for the Atroposelective Bromination of 3-Arylquinazolin-4(3H)-ones

JM Crawford, EA Stone, AJ Metrano… - Journal of the …, 2018 - ACS Publications
We report the development of a method to parameterize and predict the performance of
structurally flexible β-turn-containing peptide catalysts, using the atroposelective …

Gabapentin: a stereochemically constrained γ amino acid residue in hybrid peptide design

PG Vasudev, S Chatterjee, N Shamala… - Accounts of chemical …, 2009 - ACS Publications
Photographs courtesy of Prof. P. Balaram, Indian Institute of Science. Nature has used the all-
α-polypeptide backbone of proteins to create a remarkable diversity of folded structures …

Hybrid peptide design. Hydrogen bonded conformations in peptides containing the stereochemically constrained γ-amino acid residue, gabapentin

PG Vasudev, K Ananda, S Chatterjee… - Journal of the …, 2007 - ACS Publications
The crystal structure of 12 peptides containing the conformationally constrained 1-
(aminomethyl) cyclohexaneacetic acid, gabapentin (Gpn), are reported. In all the 39 Gpn …