Three-dimensional protein structure prediction: Methods and computational strategies

M Dorn, MB e Silva, LS Buriol, LC Lamb - Computational biology and …, 2014 - Elsevier
A long standing problem in structural bioinformatics is to determine the three-dimensional (3-
D) structure of a protein when only a sequence of amino acid residues is given. Many …

A comprehensive review and comparison of different computational methods for protein remote homology detection

J Chen, M Guo, X Wang, B Liu - Briefings in bioinformatics, 2018 - academic.oup.com
Protein remote homology detection is one of the most fundamental and central problems for
the studies of protein structures and functions, aiming to detect the distantly evolutionary …

Phototactic guidance of a tissue-engineered soft-robotic ray

SJ Park, M Gazzola, KS Park, S Park, V Di Santo… - Science, 2016 - science.org
Inspired by the relatively simple morphological blueprint provided by batoid fish such as
stingrays and skates, we created a biohybrid system that enables an artificial animal—a …

Crystal structure of Zika virus NS2B-NS3 protease in complex with a boronate inhibitor

J Lei, G Hansen, C Nitsche, CD Klein, L Zhang… - Science, 2016 - science.org
The ongoing Zika virus (ZIKV) outbreak is linked to severe neurological disorders. ZIKV
relies on its NS2B/NS3 protease for polyprotein processing; hence, this enzyme is an …

D538G mutation in estrogen receptor-α: A novel mechanism for acquired endocrine resistance in breast cancer

K Merenbakh-Lamin, N Ben-Baruch, A Yeheskel… - Cancer research, 2013 - AACR
Resistance to endocrine therapy occurs in virtually all patients with estrogen receptor α
(ERα)-positive metastatic breast cancer, and is attributed to various mechanisms including …

Natively glycosylated HIV-1 Env structure reveals new mode for antibody recognition of the CD4-binding site

HB Gristick, L von Boehmer, AP West Jr… - Nature structural & …, 2016 - nature.com
HIV-1 vaccine design is informed by structural studies elucidating mechanisms by which
broadly neutralizing antibodies (bNAbs) recognize and/or accommodate N-glycans on the …

The interplay of SARS-CoV-2 evolution and constraints imposed by the structure and functionality of its proteins

L Jaroszewski, M Iyer, A Alisoltani… - PLoS computational …, 2021 - journals.plos.org
The unprecedented pace of the sequencing of the SARS-CoV-2 virus genomes provides us
with unique information about the genetic changes in a single pathogen during ongoing …

A pan-cancer catalogue of cancer driver protein interaction interfaces

E Porta-Pardo, L Garcia-Alonso, T Hrabe… - PLoS computational …, 2015 - journals.plos.org
Despite their importance in maintaining the integrity of all cellular pathways, the role of
mutations on protein-protein interaction (PPI) interfaces as cancer drivers has not been …

Mechanisms of Lin28-mediated miRNA and mRNA regulation—a structural and functional perspective

F Mayr, U Heinemann - International journal of molecular sciences, 2013 - mdpi.com
Lin28 is an essential RNA-binding protein that is ubiquitously expressed in embryonic stem
cells. Its physiological function has been linked to the regulation of differentiation …

Bioinformatic and functional characterization of the basic peroxidase 72 from Arabidopsis thaliana involved in lignin biosynthesis

J Herrero, F Fernández-Pérez, T Yebra, E Novo-Uzal… - Planta, 2013 - Springer
Lignins result from the oxidative polymerization of three hydroxycinnamyl (p-coumaryl,
coniferyl, and sinapyl) alcohols in a reaction mediated by peroxidases. The most important …