Diversity and ecology of protists revealed by metabarcoding
Protists are the dominant eukaryotes in the biosphere where they play key functional roles.
While protists have been studied for over a century, it is the high-throughput sequencing of …
While protists have been studied for over a century, it is the high-throughput sequencing of …
Scaling up: A guide to high‐throughput genomic approaches for biodiversity analysis
The purpose of this review is to present the most common and emerging DNA‐based
methods used to generate data for biodiversity and biomonitoring studies. As environmental …
methods used to generate data for biodiversity and biomonitoring studies. As environmental …
Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool
Abstract The Interactive Tree Of Life (https://itol. embl. de) is an online tool for the
management, display, annotation and manipulation of phylogenetic and other trees. It is …
management, display, annotation and manipulation of phylogenetic and other trees. It is …
Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
Abstract The Interactive Tree Of Life (https://itol. embl. de) is an online tool for the display,
manipulation and annotation of phylogenetic and other trees. It is freely available and open …
manipulation and annotation of phylogenetic and other trees. It is freely available and open …
Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?
True fungi (Fungi) and fungus-like organisms (eg Mycetozoa, Oomycota) constitute the
second largest group of organisms based on global richness estimates, with around 3 …
second largest group of organisms based on global richness estimates, with around 3 …
Interactive Tree Of Life (iTOL) v4: recent updates and new developments
Abstract The Interactive Tree Of Life (https://itol. embl. de) is an online tool for the display,
manipulation and annotation of phylogenetic and other trees. It is freely available and open …
manipulation and annotation of phylogenetic and other trees. It is freely available and open …
The EMBL-EBI search and sequence analysis tools APIs in 2019
The EMBL-EBI provides free access to popular bioinformatics sequence analysis
applications as well as to a full-featured text search engine with powerful cross-referencing …
applications as well as to a full-featured text search engine with powerful cross-referencing …
Treeio: An R Package for Phylogenetic Tree Input and Output with Richly Annotated and Associated Data
Phylogenetic trees and data are often stored in incompatible and inconsistent formats. The
outputs of software tools that contain trees with analysis findings are often not compatible …
outputs of software tools that contain trees with analysis findings are often not compatible …
[BOK][B] Environmental DNA: For biodiversity research and monitoring
Environmental DNA (eDNA) refers to DNA that can be extracted from environmental
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …
Constructing a broadly inclusive seed plant phylogeny
Premise of the Study Large phylogenies can help shed light on macroevolutionary patterns
that inform our understanding of fundamental processes that shape the tree of life. These …
that inform our understanding of fundamental processes that shape the tree of life. These …