Chemical reporters for biological discovery

M Grammel, HC Hang - Nature chemical biology, 2013 - nature.com
Functional tools are needed to understand complex biological systems. Here we review how
chemical reporters in conjunction with bioorthogonal labeling methods can be used to …

Labelling of DNA and RNA in the cellular environment by means of bioorthogonal cycloaddition chemistry

D Ganz, D Harijan, HA Wagenknecht - RSC Chemical Biology, 2020 - pubs.rsc.org
Labelling of nucleic acids as biologically important cellular components is a crucial
prerequisite for the visualization and understanding of biological processes. Efficient …

Alkene–tetrazine ligation for imaging cellular DNA

U Rieder, NW Luedtke - Angewandte Chemie International …, 2014 - Wiley Online Library
Vinyl‐2′‐deoxyuridine (VdU) is the first reported metabolic probe for cellular DNA
synthesis that can be visualized by using an inverse electron demand Diels–Alder reaction …

Tracking viral genomes in host cells at single-molecule resolution

IH Wang, M Suomalainen, V Andriasyan, S Kilcher… - Cell host & …, 2013 - cell.com
Viral DNA trafficking in cells has large impacts on physiology and disease development.
Current methods lack the resolution and accuracy to visualize and quantify viral DNA …

An azide‐modified nucleoside for metabolic labeling of DNA

AB Neef, NW Luedtke - ChemBioChem, 2014 - Wiley Online Library
Metabolic incorporation of azido nucleoside analogues into living cells can enable sensitive
detection of DNA replication through copper (I)‐catalyzed azide–alkyne cycloaddition …

Site-specific terminal and internal labeling of RNA by poly (A) polymerase tailing and copper-catalyzed or copper-free strain-promoted click chemistry

ML Winz, A Samanta, D Benzinger… - Nucleic acids …, 2012 - academic.oup.com
The modification of RNA with fluorophores, affinity tags and reactive moieties is of enormous
utility for studying RNA localization, structure and dynamics as well as diverse biological …

Postsynthetic modifications of DNA and RNA by means of copper-free cycloadditions as bioorthogonal reactions

K Krell, D Harijan, D Ganz, L Doll… - Bioconjugate …, 2020 - ACS Publications
Bioorthogonal chemistry has mainly been developed for proteins and carbohydrates. The
chemistry of nucleic acids is different, and bioorthogonal labeling strategies that were …

5-Substituted pyrimidine and 7-substituted 7-deazapurine dNTPs as substrates for DNA polymerases in competitive primer extension in the presence of natural dNTPs

H Cahová, A Panattoni, P Kielkowski… - ACS Chemical …, 2016 - ACS Publications
A complete series of 5-substituted uracil or cytosine, as well as 7-substituted 7-
deazaadenine and 7-deazaguanine 2′-deoxyribonucleoside triphosphates (dNTPs) …

7‐Aryl‐7‐deazaadenine 2′‐deoxyribonucleoside triphosphates (dNTPs): better substrates for DNA polymerases than dATP in competitive incorporations

P Kielkowski, J Fanfrlík, M Hocek - … Chemie International Edition, 2014 - Wiley Online Library
Abstract A series of 7‐substituted 7‐deazaadenine and 5‐substituted cytosine 2′‐
deoxyribonucleoside triphosphates (dNTPs) were tested for their competitive incorporations …

Imaging beyond the proteome

PV Chang, CR Bertozzi - Chemical Communications, 2012 - pubs.rsc.org
Imaging technologies developed in the early 20th century achieved contrast solely by
relying on macroscopic and morphological differences between the tissues of interest and …