Exploring tissue architecture using spatial transcriptomics

A Rao, D Barkley, GS França, I Yanai - Nature, 2021 - nature.com
Deciphering the principles and mechanisms by which gene activity orchestrates complex
cellular arrangements in multicellular organisms has far-reaching implications for research …

Unbiased spatial proteomics with single-cell resolution in tissues

A Mund, AD Brunner, M Mann - Molecular Cell, 2022 - cell.com
Mass spectrometry (MS)-based proteomics has become a powerful technology to quantify
the entire complement of proteins in cells or tissues. Here, we review challenges and recent …

Exploration of cell state heterogeneity using single-cell proteomics through sensitivity-tailored data-independent acquisition

V Petrosius, P Aragon-Fernandez, N Üresin… - Nature …, 2023 - nature.com
Single-cell resolution analysis of complex biological tissues is fundamental to capture cell-
state heterogeneity and distinct cellular signaling patterns that remain obscured with …

Single-cell proteomics: progress and prospects

RT Kelly - Molecular & Cellular Proteomics, 2020 - ASBMB
MS-based proteome profiling has become increasingly comprehensive and quantitative, yet
a persistent shortcoming has been the relatively large samples required to achieve an in …

[HTML][HTML] Extracellular matrix-derived materials for tissue engineering and regenerative medicine: a journey from isolation to characterization and application

H Vilaça-Faria, J Noro, RL Reis, RP Pirraco - Bioactive Materials, 2024 - Elsevier
Biomaterial choice is an essential step during the development tissue engineering and
regenerative medicine (TERM) applications. The selected biomaterial must present …

Advances in mass spectrometry imaging for spatial cancer metabolomics

X Ma, FM Fernández - Mass spectrometry reviews, 2024 - Wiley Online Library
Mass spectrometry (MS) has become a central technique in cancer research. The ability to
analyze various types of biomolecules in complex biological matrices makes it well suited for …

Ultrasensitive single-cell proteomics workflow identifies> 1000 protein groups per mammalian cell

Y Cong, K Motamedchaboki, SA Misal, Y Liang… - Chemical …, 2021 - pubs.rsc.org
We report on the combination of nanodroplet sample preparation, ultra-low-flow nanoLC,
high-field asymmetric ion mobility spectrometry (FAIMS), and the latest-generation Orbitrap …

Quantitative mass spectrometry imaging of biological systems

D Unsihuay, D Mesa Sanchez… - Annual review of physical …, 2021 - annualreviews.org
Mass spectrometry imaging (MSI) is a powerful, label-free technique that provides detailed
maps of hundreds of molecules in complex samples with high sensitivity and subcellular …

Expanded vacuum-stable gels for multiplexed high-resolution spatial histopathology

Y Bai, B Zhu, JP Oliveria, BJ Cannon… - Nature …, 2023 - nature.com
Cellular organization and functions encompass multiple scales in vivo. Emerging high-plex
imaging technologies are limited in resolving subcellular biomolecular features. Expansion …

Ten years of extracellular matrix proteomics: accomplishments, challenges, and future perspectives

A Naba - Molecular & Cellular Proteomics, 2023 - ASBMB
The extracellular matrix (ECM) is a complex assembly of hundreds of proteins forming the
architectural scaffold of multicellular organisms. In addition to its structural role, the ECM …