Clinical metagenomics

CY Chiu, SA Miller - Nature Reviews Genetics, 2019 - nature.com
Clinical metagenomic next-generation sequencing (mNGS), the comprehensive analysis of
microbial and host genetic material (DNA and RNA) in samples from patients, is rapidly …

The potential of using blood circular RNA as liquid biopsy biomarker for human diseases

G Wen, T Zhou, W Gu - Protein & cell, 2021 - academic.oup.com
Circular RNA (circRNA) is a novel class of single-stranded RNAs with a closed loop
structure. The majority of circRNAs are formed by a back-splicing process in pre-mRNA …

Minimum redundancy maximum relevance feature selection approach for temporal gene expression data

M Radovic, M Ghalwash, N Filipovic, Z Obradovic - BMC bioinformatics, 2017 - Springer
Background Feature selection, aiming to identify a subset of features among a possibly large
set of features that are relevant for predicting a response, is an important preprocessing step …

CD177, a specific marker of neutrophil activation, is associated with coronavirus disease 2019 severity and death

Y Lévy, A Wiedemann, BP Hejblum, M Durand… - Iscience, 2021 - cell.com
The identification of patients with coronavirus disease 2019 and high risk of severe disease
is a challenge in routine care. We performed cell phenotypic, serum, and RNA sequencing …

Personalized medicine: progress and promise

IS Chan, GS Ginsburg - Annual review of genomics and human …, 2011 - annualreviews.org
Personalized medicine is a broad and rapidly advancing field of health care that is informed
by each person's unique clinical, genetic, genomic, and environmental information …

Host gene expression classifiers diagnose acute respiratory illness etiology

EL Tsalik, R Henao, M Nichols, T Burke… - Science translational …, 2016 - science.org
Acute respiratory infections caused by bacterial or viral pathogens are among the most
common reasons for seeking medical care. Despite improvements in pathogen-based …

Neutrophils-related host factors associated with severe disease and fatality in patients with influenza infection

BM Tang, M Shojaei, S Teoh, A Meyers, J Ho… - Nature …, 2019 - nature.com
Severe influenza infection has no effective treatment available. One of the key barriers to
develo** host-directed therapy is a lack of reliable prognostic factors needed to guide …

Approaches and applications of early classification of time series: A review

A Gupta, HP Gupta, B Biswas… - IEEE Transactions on …, 2020 - ieeexplore.ieee.org
Early classification of time series has been extensively studied for minimizing class
prediction delay in time-sensitive applications such as medical diagnostic and industrial …

Antibodies to a conserved influenza head interface epitope protect by an IgG subtype-dependent mechanism

A Watanabe, KR McCarthy, M Kuraoka, AG Schmidt… - Cell, 2019 - cell.com
Vaccines to generate durable humoral immunity against antigenically evolving pathogens
such as the influenza virus must elicit antibodies that recognize conserved epitopes …

Robust classification of bacterial and viral infections via integrated host gene expression diagnostics

TE Sweeney, HR Wong, P Khatri - Science translational medicine, 2016 - science.org
Improved diagnostics for acute infections could decrease morbidity and mortality by
increasing early antibiotics for patients with bacterial infections and reducing unnecessary …